Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 7.2e-95 350.5 170 100.0
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 1.4e-61 240.0 181 69.6
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.8e-61 239.6 181 68.5
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.8e-61 239.6 180 68.3
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 2.3e-61 239.2 181 69.1
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 6.8e-61 237.7 169 65.7
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.8e-61 237.7 169 65.7
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 8.8e-61 237.3 169 69.2
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 4.4e-60 235.0 179 64.2
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 4.4e-60 235.0 184 63.0
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.7e-60 234.6 169 65.7
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 7.5e-60 234.2 184 64.1
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 7.5e-60 234.2 184 64.1
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.8e-60 233.8 177 65.5
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.7e-59 233.0 182 65.4
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.2e-59 232.6 200 60.0
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.8e-59 232.3 180 63.9
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 8.3e-59 230.7 184 64.1
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.8e-58 229.6 200 59.0
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.8e-58 229.6 169 65.7
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 4.1e-58 228.4 169 65.7
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.1e-58 228.4 169 65.7
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 2.0e-57 226.1 181 64.1
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.7e-57 225.7 174 60.3
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 2.7e-57 225.7 181 63.5
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.5e-57 224.9 176 62.5
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.3e-56 222.6 201 57.2
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 3.8e-56 221.9 179 62.0
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 6.6e-56 221.1 185 61.1
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.1e-55 220.3 170 61.8
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.5e-55 219.9 172 61.0
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.5e-55 219.9 182 62.1
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.3e-55 218.8 181 58.6
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 7.3e-55 217.6 190 56.3
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 1.6e-54 216.5 205 54.1
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 3.6e-54 215.3 178 61.8
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.7e-54 214.9 180 61.1
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 8.0e-54 214.2 178 60.7
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.0e-53 213.8 205 53.7
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 3.0e-53 212.2 177 63.3
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 6.8e-53 211.1 177 57.6
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 1.2e-52 210.3 177 56.5
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.0e-52 209.5 170 58.8
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.6e-52 209.1 183 57.4
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 9.8e-52 207.2 169 55.6
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 2.2e-51 206.1 181 56.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 2.2e-51 206.1 182 60.4
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 4.9e-51 204.9 162 61.7
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 8.3e-51 204.1 169 56.8
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.4e-50 203.4 168 60.7
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.4e-50 203.4 171 59.6
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 3.2e-50 202.2 177 55.9
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 3.2e-50 202.2 181 56.9
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 9.2e-50 200.7 169 58.0
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.2e-49 200.3 167 56.9
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 2.0e-49 199.5 169 55.6
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.5e-49 198.7 119 72.3
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 3.5e-49 198.7 173 57.2
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 4.6e-49 198.4 169 57.4
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.9e-49 198.0 176 55.7
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.0e-48 197.2 176 54.0
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.7e-48 196.4 178 52.8
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.7e-48 196.4 177 51.4
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.7e-48 196.4 177 51.4
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.7e-48 196.4 113 76.1
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.3e-48 196.1 169 56.8
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 5.0e-48 194.9 169 54.4
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 5.6e-47 191.4 137 60.6
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 7.3e-47 191.0 154 60.4
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.2e-46 190.3 138 63.0
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.2e-46 190.3 141 60.3
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 2.1e-46 189.5 122 70.5
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 2.1e-46 189.5 178 52.8
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 2.1e-46 189.5 178 52.8
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 3.6e-46 188.7 114 69.3
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 6.2e-46 188.0 128 68.0
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.0e-45 187.2 171 55.6
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.3e-45 186.0 148 54.7
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 3.1e-45 185.7 151 56.3
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 3.1e-45 185.7 157 58.0
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 4.0e-45 185.3 164 53.7
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 6.8e-45 184.5 153 57.5
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 6.8e-45 184.5 153 57.5
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 6.8e-45 184.5 153 57.5
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 6.8e-45 184.5 153 57.5
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 6.8e-45 184.5 155 54.8
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 8.9e-45 184.1 169 54.4
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 8.9e-45 184.1 128 64.8
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.2e-44 183.7 151 55.6
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.5e-44 183.3 154 57.1
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 2.6e-44 182.6 124 66.1
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 3.4e-44 182.2 153 56.2
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 3.4e-44 182.2 153 56.2
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 3.4e-44 182.2 122 65.6
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.7e-43 179.9 114 66.7
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 1.7e-43 179.9 162 52.5
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.2e-43 179.5 180 50.0
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.7e-43 178.7 178 48.3
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 8.3e-43 177.6 163 52.8
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-42 176.8 176 49.4
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.4e-42 176.0 176 49.4
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.4e-42 176.0 178 50.6
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 2.4e-42 176.0 160 51.2
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 3.2e-42 175.6 176 49.4
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 4.1e-42 175.3 178 50.6
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 5.4e-42 174.9 125 59.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 7.0e-42 174.5 155 54.8
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.2e-41 173.7 156 53.2
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.2e-41 173.7 169 49.7
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-41 173.3 162 50.0
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-41 173.3 162 50.0
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.6e-41 173.3 162 50.0
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.6e-41 173.3 163 50.3
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.0e-41 172.9 120 62.5
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.6e-41 171.8 126 60.3
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.7e-40 169.9 133 55.6
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.7e-40 169.9 176 48.3
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 2.3e-40 169.5 162 50.6
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 3.0e-40 169.1 171 50.9
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 8.6e-40 167.5 174 50.6
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 4.3e-39 165.2 154 47.4
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 5.6e-39 164.9 165 49.1
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.3e-39 164.5 114 60.5
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 9.5e-39 164.1 114 62.3
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.5e-39 164.1 114 61.4
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.2e-38 163.7 120 56.7
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.1e-38 162.9 161 49.7
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 2.8e-38 162.5 120 57.5
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 3.6e-38 162.2 172 47.7
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 8.1e-38 161.0 143 53.1
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 6.8e-37 157.9 147 50.3
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 8.9e-37 157.5 120 55.0
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 7.5e-36 154.5 127 54.3
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 9.8e-36 154.1 185 45.4
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.2e-35 152.9 125 60.0
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 4.9e-35 151.8 128 54.7
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-34 150.6 114 55.3
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 2.4e-34 149.4 127 57.5
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.1e-33 146.4 130 54.6
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 3.5e-33 145.6 118 53.4
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 6.0e-33 144.8 162 43.8
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.0e-32 144.1 109 56.0
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.3e-31 139.0 123 53.7
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-30 137.1 103 54.4
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 3.6e-30 135.6 116 54.3
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 2.9e-27 125.9 109 56.0
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 4.9e-27 125.2 97 55.7
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.1e-26 124.0 112 50.9
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.1e-26 122.1 110 55.5
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.4e-26 121.7 93 58.1
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 9.2e-26 120.9 96 56.2
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.2e-26 120.9 84 56.0
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.0e-24 117.5 111 47.7
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 2.3e-24 116.3 120 45.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 6.6e-24 114.8 149 44.3
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.5e-23 113.6 119 49.6
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.8e-22 109.4 142 37.3
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.1e-21 105.9 107 47.7
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 6.9e-21 104.8 122 41.8
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 6.9e-21 104.8 122 41.8
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 2.0e-20 103.2 122 41.0
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.9e-20 100.9 123 44.7
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.3e-19 100.5 120 38.3
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 8.4e-19 97.8 121 47.1
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.4e-18 95.1 76 55.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.4e-18 95.1 68 52.9
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 2.1e-17 93.2 97 50.5
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 4.6e-17 92.0 101 44.6
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 3.6e-14 82.4 119 39.5
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 7.9e-09 64.7 39 66.7
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.0e-08 64.3 49 57.1
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 1.3e-08 63.9 72 41.7


User provided reference genes

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