Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-154 549.3 279 100.0
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-145 518.8 279 94.3
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-145 518.8 279 94.3
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 3.9e-122 441.8 294 77.9
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-116 423.3 283 77.0
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.1e-115 419.5 292 73.6
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.7e-115 419.1 292 73.3
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.5e-115 418.7 290 73.4
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 3.5e-115 418.7 292 72.6
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 4.6e-115 418.3 292 72.9
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 6.0e-115 417.9 291 71.8
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 7.8e-115 417.5 292 72.6
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.0e-114 415.6 294 72.4
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.9e-113 412.9 290 71.4
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 4.3e-113 411.8 246 85.4
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 4.3e-113 411.8 292 71.9
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 4.3e-113 411.8 292 72.3
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 5.6e-113 411.4 293 72.4
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 9.6e-113 410.6 292 71.2
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 9.6e-113 410.6 292 71.2
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.6e-112 409.8 291 71.5
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.8e-112 409.1 291 71.1
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 3.6e-112 408.7 290 71.0
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 6.2e-112 407.9 290 70.3
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.1e-111 407.1 292 72.3
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 1.1e-111 407.1 290 71.7
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 2.4e-111 406.0 290 70.0
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 4.0e-111 405.2 290 71.7
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 4.0e-111 405.2 290 70.0
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 5.3e-111 404.8 287 72.5
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 6.9e-111 404.4 291 70.1
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 6.9e-111 404.4 290 70.7
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 9.0e-111 404.1 290 71.4
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 9.0e-111 404.1 290 71.4
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 9.0e-111 404.1 292 71.6
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.5e-110 403.3 290 71.0
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.5e-110 403.3 292 71.6
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 3.4e-110 402.1 290 70.7
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 3.4e-110 402.1 291 70.8
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 9.9e-110 400.6 290 70.3
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 9.9e-110 400.6 292 69.5
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.3e-109 400.2 322 65.8
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.7e-109 399.8 291 70.4
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.7e-109 399.8 292 70.9
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.7e-109 399.8 291 71.1
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.7e-109 399.8 288 71.2
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 2.9e-109 399.1 292 69.2
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 2.9e-109 399.1 291 69.4
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 2.9e-109 399.1 291 68.7
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 2.9e-109 399.1 292 70.2
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 4.9e-109 398.3 292 70.2
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 4.9e-109 398.3 292 69.5
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 8.4e-109 397.5 304 67.8
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 8.4e-109 397.5 294 70.7
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.4e-108 396.7 291 70.4
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.9e-108 396.4 292 68.8
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 2.4e-108 396.0 291 68.7
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 5.4e-108 394.8 292 68.5
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 7.1e-108 394.4 291 68.4
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.6e-107 393.3 292 70.5
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.6e-107 393.3 292 68.5
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 2.1e-107 392.9 292 69.5
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.1e-107 392.9 292 67.8
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.1e-107 392.9 280 70.7
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.7e-107 392.5 326 64.7
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 7.9e-107 391.0 297 67.3
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.0e-106 390.6 290 67.9
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.3e-106 390.2 290 69.7
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 1.3e-106 390.2 272 72.8
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.3e-106 389.4 290 67.6
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.0e-106 389.0 283 70.0
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 5.1e-106 388.3 290 69.0
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 8.7e-106 387.5 291 69.8
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 1.1e-105 387.1 293 68.6
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.9e-105 386.3 290 66.6
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.3e-105 385.6 287 68.3
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.6e-105 384.8 290 66.6
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.1e-104 382.9 293 66.2
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 2.1e-104 382.9 292 67.5
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 2.8e-104 382.5 292 68.8
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 3.6e-104 382.1 287 68.6
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 4.8e-104 381.7 293 67.6
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 6.2e-104 381.3 292 66.4
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 2.4e-103 379.4 321 63.2
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 5.3e-103 378.3 294 66.0
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 6.9e-103 377.9 289 68.5
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 3.4e-102 375.6 323 62.8
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.5e-102 375.2 310 62.9
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 5.8e-102 374.8 298 66.1
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.8e-102 374.8 308 63.0
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 9.9e-102 374.0 289 67.5
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 9.9e-102 374.0 291 64.6
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 1.3e-101 373.6 289 67.5
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 4.9e-101 371.7 293 65.2
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.1e-100 370.5 291 65.6
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.4e-100 370.2 292 65.4
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 9.3e-100 367.5 293 66.2
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 6.0e-99 364.8 290 65.2
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 3.0e-98 362.5 289 64.0
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 5.1e-98 361.7 297 64.0
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 8.7e-98 360.9 268 69.4
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.9e-97 359.8 291 63.9
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.9e-97 359.8 290 63.1
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 3.3e-97 359.0 291 64.9
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.3e-97 358.6 284 65.8
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.3e-96 357.1 291 63.2
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.6e-96 356.7 284 65.8
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 6.9e-95 351.3 297 63.0
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 2.0e-94 349.7 292 62.7
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 2.6e-94 349.4 285 63.2
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 7.6e-94 347.8 292 63.7
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 4.2e-92 342.0 385 52.5
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 9.3e-92 340.9 293 60.8
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 9.3e-92 340.9 237 73.8
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 2.1e-88 329.7 294 59.9
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 2.6e-86 322.8 242 67.8
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 5.9e-86 321.6 257 65.8
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.3e-85 320.5 291 59.5
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.1e-82 308.5 298 57.7
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.1e-81 307.4 228 68.0
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 1.9e-81 306.6 292 57.5
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 2.2e-80 303.1 238 66.0
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 2.2e-80 303.1 191 77.5
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 8.2e-80 301.2 292 58.2
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 2.6e-78 296.2 288 57.6
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.0e-74 284.3 282 53.2
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 4.8e-72 275.4 208 68.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 1.5e-70 270.4 295 49.8
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.7e-69 266.9 191 66.5
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 2.2e-69 266.5 296 51.4
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 1.7e-64 250.4 286 50.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 3.1e-63 246.1 202 62.9
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 7.7e-62 241.5 138 90.6
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 2.1e-59 233.4 184 63.0
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.0e-58 229.6 277 48.4
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 7.0e-55 218.4 282 47.9
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 7.0e-55 218.4 282 47.9
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 7.0e-55 218.4 282 47.9
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 8.5e-53 211.5 108 98.1
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 4.5e-46 189.1 254 49.6
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.5e-44 184.1 105 85.7
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.4e-41 172.6 153 59.5
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.3e-40 171.0 153 58.8
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.3e-40 171.0 153 58.8
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 6.6e-37 158.7 218 45.0
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.3e-32 144.4 194 43.3
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.7e-32 144.1 85 81.2
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 3.1e-26 123.2 73 80.8
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 3.1e-26 123.2 73 80.8
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.2e-25 121.3 72 80.6
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 2.3e-21 107.1 79 67.1
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 2.1e-19 100.5 175 39.4
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.2e-17 94.7 106 48.1
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 2.0e-17 94.0 128 44.5
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 3.7e-16 89.7 94 55.3
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 1.6e-14 84.3 60 63.3
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 2.7e-14 83.6 59 67.8
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.5e-14 83.2 91 51.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.1e-10 71.6 231 28.1
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.4e-10 70.5 58 63.8
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.3e-08 64.7 86 45.3


User provided reference genes

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