Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 2129.8 1158 100.0
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1550.0 1172 72.5
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1543.9 1179 72.6
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1540.4 1174 73.4
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1516.1 1170 70.9
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1516.1 1173 70.4
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1514.2 1178 72.4
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1513.8 1178 72.1
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1513.0 1189 69.9
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1507.7 1192 70.1
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1505.0 1195 70.2
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1504.2 1178 70.4
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1503.0 1213 68.2
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1502.3 1179 70.1
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1498.8 1171 72.0
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1493.8 1211 68.5
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1493.0 1200 70.9
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1492.2 1181 71.2
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1490.7 1171 71.6
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1488.8 1180 71.0
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1488.0 1171 69.7
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1486.9 1185 71.1
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1486.9 1190 69.2
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1486.1 1161 69.9
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1484.2 1172 71.4
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1471.8 1170 68.9
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1470.7 1175 69.3
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1466.8 1176 71.0
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1463.7 1183 70.4
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1462.6 1172 70.3
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1462.2 1177 70.4
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1459.1 1174 68.7
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1458.4 1166 70.2
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1458.4 1168 70.3
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1458.0 1174 70.5
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1456.4 1179 68.1
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1456.0 1172 68.5
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1454.9 1178 67.7
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1454.5 1169 70.2
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1453.7 1178 69.7
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1451.8 1183 69.4
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1451.4 1174 69.0
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1451.0 1176 69.6
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1447.6 1172 70.5
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1447.6 1172 70.5
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1439.1 1166 69.0
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1436.4 1175 69.4
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1435.6 1173 68.7
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1434.1 1179 68.4
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1431.8 1160 69.9
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1431.4 1157 69.3
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1196 67.6
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1424.1 1155 69.1
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1424.1 1157 68.8
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1420.2 1169 67.9
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1418.3 1155 68.7
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1414.8 1169 67.8
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1411.7 1156 69.4
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1409.8 1159 68.2
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1406.3 1159 68.4
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1404.8 1195 66.3
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1404.8 1179 67.9
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1404.0 1171 65.5
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1401.3 1179 68.0
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1401.0 1161 69.8
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1399.8 1168 69.7
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1398.3 1161 69.7
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1398.3 1166 69.4
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1397.5 1164 69.7
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1396.7 1163 69.6
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1394.4 1164 69.9
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1394.4 1163 69.6
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1393.6 1164 67.4
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1385.2 1169 66.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1382.1 1166 67.0
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1367.4 1170 67.2
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1362.1 1180 66.4
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1357.4 1220 62.9
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1343.2 1163 64.1
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1340.1 1129 67.7
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1338.6 1166 63.1
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1338.6 1159 66.4
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1332.0 1174 65.4
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1324.3 1176 63.3
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1310.0 1194 63.1
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1308.5 1207 63.9
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1217.6 900 73.2
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1214.5 964 71.1
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1137.5 1059 62.7
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1110.9 939 66.1
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1104.7 1261 51.7
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1096.6 1218 53.7
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 1.6e-311 1072.8 1221 53.2
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 6.0e-302 1041.2 738 72.1
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.9e-293 1011.9 1174 52.8
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.4e-266 922.9 741 66.8
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 1.8e-250 870.2 1394 42.4
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 6.7e-245 851.7 590 75.1
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 2.2e-240 836.6 594 76.8
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 2.3e-216 756.9 526 74.9
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.1e-215 754.6 526 74.5
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 3.5e-209 733.0 620 63.2
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 1.1e-207 728.0 519 73.8
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 2.2e-195 687.2 626 61.0
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 2.2e-179 634.0 620 59.5
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.5e-172 611.3 1181 36.6
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.6e-169 601.3 599 59.4
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.8e-163 580.1 571 58.7
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.7e-158 563.5 559 58.7
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 5.7e-143 513.1 393 67.9
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.5e-140 505.0 469 61.6
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 3.3e-135 487.3 558 53.8
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 1.8e-128 464.9 327 74.9
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.5e-127 461.8 325 74.5
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 8.9e-112 409.5 492 52.6
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 5.8e-103 380.2 554 45.5
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.6e-100 372.1 1199 27.9
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.6e-100 372.1 368 58.2
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.6e-99 366.3 377 57.6
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.2e-92 345.9 782 33.9
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.2e-92 345.9 362 51.7
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 3.5e-92 344.4 217 90.8
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 2.4e-85 321.6 216 79.2
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 2.1e-76 292.0 454 46.5
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 3.5e-76 291.2 253 56.9
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 9.6e-74 283.1 248 64.1
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 2.0e-71 275.4 225 69.8
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 5.3e-64 250.8 147 84.4
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 1.2e-63 249.6 242 61.6
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 2.6e-63 248.4 149 85.9
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 7.1e-61 240.4 149 77.2
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.8e-56 225.7 203 60.1
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.2e-54 218.8 358 42.5
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.2e-52 213.0 358 41.6
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 2.3e-51 208.8 358 41.1
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 1.5e-50 206.1 358 40.8
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.6e-49 202.6 106 95.3
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 2.6e-47 195.3 113 86.7
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 6.5e-46 190.7 111 86.5
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-45 189.5 113 85.0
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 2.7e-44 185.3 113 83.2
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 3.5e-44 184.9 113 83.2
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 1.3e-41 176.4 106 85.8
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 4.8e-41 174.5 109 82.6
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.1e-40 171.4 595 28.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 4.5e-39 167.9 97 86.6
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.9e-37 162.5 99 82.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.5e-37 162.2 89 91.0
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 4.3e-34 151.4 82 93.9
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.0e-30 137.9 125 59.2
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.0e-26 125.9 176 42.0
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 6.5e-22 110.9 73 76.7
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 2.5e-21 109.0 75 76.0
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 4.2e-21 108.2 71 80.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 7.2e-21 107.5 75 74.7
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 8.0e-20 104.0 91 63.7
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 5.2e-19 101.3 91 60.4
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 6.7e-19 100.9 190 42.6


User provided reference genes

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