Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 2996.1 1510 100.0
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1933.3 1513 65.0
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1931.4 1514 64.7
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1929.8 1514 65.3
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1919.8 1514 64.9
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1895.6 1523 63.5
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1882.1 1503 64.0
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1869.7 1510 63.6
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1862.0 1521 62.9
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1856.3 1512 63.0
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1845.1 1554 62.4
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1820.4 1518 61.5
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1795.4 1513 61.5
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1784.6 1515 61.1
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1771.5 1536 60.5
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1764.6 1509 60.6
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1739.9 1511 59.0
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1739.5 1462 62.0
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1724.9 1530 58.6
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1717.6 1516 58.9
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1714.5 1512 59.1
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1702.2 1528 58.8
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1686.0 1515 58.3
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1686.0 1515 57.8
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1685.2 1619 55.9
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1681.4 1517 57.5
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1670.6 1519 57.4
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1666.7 1518 57.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1662.9 1516 57.3
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1661.0 1512 56.4
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1658.7 1513 57.5
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1651.0 1515 56.4
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1648.3 1523 56.7
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1645.2 1524 55.6
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1644.8 1514 57.3
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1639.4 1522 56.8
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1638.6 1523 55.7
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1626.3 1515 57.1
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1622.8 1199 68.5
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1622.1 1520 57.3
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1612.8 1532 55.7
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1612.8 1532 55.7
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1611.3 1437 58.5
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1606.7 1513 55.7
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1605.5 1520 54.9
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1605.5 1515 55.6
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1587.8 1543 54.6
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1582.8 1517 55.0
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1577.0 1518 54.2
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1570.1 1516 55.4
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1565.8 1307 61.1
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1558.1 1514 54.8
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1552.3 1521 54.8
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1551.2 1508 54.6
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1550.0 1525 55.1
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1540.8 1509 53.1
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1526.5 1507 54.1
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1512.7 1530 51.3
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1511.9 1510 53.0
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1486.1 1515 53.3
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1457.6 1533 51.1
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1457.2 1241 60.3
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1430.2 1514 51.0
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1411.4 1520 50.2
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1410.2 1520 50.3
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1410.2 1517 50.3
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1406.0 1514 50.0
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1404.0 1519 50.3
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1403.7 1516 50.1
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1397.1 1523 51.0
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1392.9 1519 49.8
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1392.9 1521 49.9
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1385.9 1548 49.1
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1384.8 1548 49.0
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1378.6 1468 50.9
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1377.5 1509 49.2
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1362.8 1566 49.4
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1360.9 1520 49.5
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1345.1 1758 44.1
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1342.8 1511 47.9
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1335.5 1518 49.3
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1324.7 1400 52.0
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1319.7 1156 59.3
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1315.1 1119 62.6
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1302.0 1542 47.5
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1282.3 1555 46.6
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1266.1 1096 59.5
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1238.8 1054 61.2
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1234.9 1293 50.7
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1216.4 1132 56.2
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1205.7 1517 43.8
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1135.2 981 60.1
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 4.2e-263 912.5 1142 45.2
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 6.7e-245 852.0 1156 42.1
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.9e-239 833.9 1528 35.3
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.8e-234 817.4 1550 34.6
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.6e-230 804.3 1543 34.6
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 9.1e-226 788.5 1022 45.1
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.2e-222 778.1 988 44.8
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 5.0e-208 729.6 586 64.2
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 7.5e-204 715.7 567 63.5
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 2.9e-203 713.8 570 63.7
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 6.4e-203 712.6 1021 42.2
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.4e-202 711.4 1055 41.6
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 4.1e-202 709.9 643 58.3
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 4.6e-201 706.4 1056 41.4
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.2e-196 691.8 605 60.0
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 1.7e-195 688.0 1401 33.2
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 7.1e-194 682.6 614 58.8
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 1.3e-158 565.5 480 62.5
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 8.5e-147 526.2 571 50.8
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.3e-126 459.1 568 44.9
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.0e-124 451.8 575 44.2
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.7e-123 448.7 1045 31.7
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.3e-110 406.0 505 45.3
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 6.3e-110 403.7 526 44.5
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-102 377.5 1005 27.4
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.2e-95 356.3 456 44.5
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.5e-90 338.6 553 37.4
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.5e-90 338.6 320 52.2
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.1e-88 333.2 306 57.8
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.5e-87 329.3 419 46.5
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 1.9e-82 312.4 375 45.1
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 7.6e-79 300.4 209 71.8
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 3.5e-76 291.6 390 43.6
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 2.3e-75 288.9 448 41.3
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.6e-68 266.2 337 49.0
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 3.5e-68 265.0 847 27.6
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.0e-67 263.5 333 45.0
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 8.7e-67 260.4 316 44.9
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.6e-65 256.1 276 49.3
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 6.2e-65 254.2 357 40.1
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-64 253.1 283 49.5
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 3.0e-59 235.3 482 33.6
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.5e-55 223.0 223 52.0
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 7.6e-55 220.7 189 57.1
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.9e-54 218.0 292 42.8
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 2.7e-52 212.2 195 60.0
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.8e-51 209.5 250 46.0
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.1e-48 198.7 317 38.8
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 1.5e-47 196.4 183 58.5
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 9.3e-45 187.2 196 51.5
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.0e-43 183.7 128 68.0
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 5.7e-42 177.9 387 34.9
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 5.0e-38 164.9 208 44.7
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 2.5e-37 162.5 119 65.5
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 1.8e-35 156.4 197 45.7
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 5.7e-34 151.4 107 63.6
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 9.7e-34 150.6 125 59.2
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 2.8e-33 149.1 146 52.7
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 7.7e-31 141.0 116 61.2
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 2.9e-30 139.0 113 57.5
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.3e-22 113.6 115 53.9
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 2.9e-22 112.5 94 63.8
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-21 110.2 94 62.8
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-16 92.4 245 27.8
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 1.0e-14 87.4 269 26.0
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 5.5e-13 81.6 672 20.8
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 3.3e-10 72.4 77 49.4
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.7e-09 70.1 42 76.2
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 5.3e-08 65.1 61 50.8
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 4.5e-07 62.0 66 53.0
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 4.5e-07 62.0 47 61.7
CDE01G0012 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 3.8e-06 58.9 59 47.5


User provided reference genes

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