Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 3.3e-144 515.0 258 100.0
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.8e-113 412.9 246 85.4
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 4.0e-113 411.8 244 85.7
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 4.0e-113 411.8 244 85.7
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 3.9e-100 368.6 269 72.9
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 4.0e-97 358.6 228 79.4
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.5e-96 356.7 230 76.1
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.7e-95 353.2 237 76.4
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.4e-95 351.3 262 70.2
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 1.1e-94 350.5 258 70.5
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.4e-94 350.1 271 68.3
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.4e-94 349.4 229 75.5
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 5.4e-94 348.2 237 75.5
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 5.4e-94 348.2 237 75.1
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 7.1e-94 347.8 272 67.6
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 9.2e-94 347.4 272 67.6
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 9.2e-94 347.4 272 67.6
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 9.2e-94 347.4 258 69.4
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.6e-93 346.7 238 74.8
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.6e-93 346.7 239 73.6
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 2.1e-93 346.3 243 72.8
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.7e-93 345.9 258 69.4
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 3.5e-93 345.5 237 74.3
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.6e-93 345.1 271 67.2
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 4.6e-93 345.1 243 72.8
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 6.0e-93 344.7 236 75.4
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 7.8e-93 344.4 206 81.1
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 7.8e-93 344.4 206 81.1
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 7.8e-93 344.4 237 74.7
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 7.8e-93 344.4 271 66.8
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.3e-92 343.6 261 68.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 5.1e-92 341.7 249 69.5
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 6.6e-92 341.3 272 66.5
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 6.6e-92 341.3 222 76.1
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.1e-91 340.5 274 64.6
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.1e-91 340.5 218 77.1
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.5e-91 340.1 223 74.9
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.5e-91 340.1 239 71.1
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.5e-91 340.1 204 79.9
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 3.3e-91 339.0 234 72.6
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.3e-91 338.6 260 67.7
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 4.3e-91 338.6 260 69.2
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 5.6e-91 338.2 258 68.6
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 5.6e-91 338.2 222 74.8
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 7.3e-91 337.8 218 77.1
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 7.3e-91 337.8 218 77.1
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 9.5e-91 337.4 252 68.3
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.6e-90 336.7 270 65.2
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.6e-90 336.7 218 74.8
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.6e-90 336.7 246 69.9
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 2.8e-90 335.9 269 65.1
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.8e-90 335.9 229 73.4
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 3.6e-90 335.5 220 74.5
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 3.6e-90 335.5 268 66.0
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 3.6e-90 335.5 218 74.8
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 3.6e-90 335.5 227 73.6
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 3.6e-90 335.5 204 78.4
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 4.7e-90 335.1 276 65.6
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 6.2e-90 334.7 228 73.7
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 8.1e-90 334.3 252 67.5
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 8.1e-90 334.3 269 64.7
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 8.1e-90 334.3 204 78.4
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.4e-89 333.6 270 65.6
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 1.4e-89 333.6 235 71.5
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.4e-89 333.6 273 65.6
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.4e-89 333.6 272 65.8
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.4e-89 333.6 271 66.1
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.8e-89 333.2 252 67.5
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.8e-89 333.2 261 66.7
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.8e-89 333.2 258 66.3
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 2.3e-89 332.8 227 71.8
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 2.3e-89 332.8 270 63.7
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 2.3e-89 332.8 205 77.1
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.3e-89 332.8 220 75.0
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.3e-89 332.8 245 69.0
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 3.1e-89 332.4 223 72.2
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 4.0e-89 332.0 270 64.1
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 5.2e-89 331.6 246 69.1
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 5.2e-89 331.6 220 73.2
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 6.8e-89 331.3 270 64.1
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 6.8e-89 331.3 218 73.4
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.8e-89 331.3 218 73.4
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 6.8e-89 331.3 205 76.6
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 6.8e-89 331.3 258 65.9
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 8.9e-89 330.9 206 77.2
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.2e-88 330.5 237 70.5
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.5e-88 330.1 270 63.3
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 1.5e-88 330.1 259 66.8
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.6e-88 329.3 252 67.5
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.6e-88 327.8 218 72.5
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 7.6e-88 327.8 257 66.1
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.3e-87 327.0 256 66.4
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.3e-87 327.0 205 75.1
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 4.9e-87 325.1 238 70.2
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.1e-86 323.9 218 71.6
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.1e-86 323.9 272 63.6
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.4e-86 323.6 262 63.7
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 7.1e-86 321.2 209 75.6
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 7.1e-86 321.2 260 63.1
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 9.2e-86 320.9 224 69.6
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.6e-85 320.1 224 67.4
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 6.0e-85 318.2 244 68.9
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.8e-85 317.8 236 67.4
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.3e-84 317.0 238 66.8
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 3.9e-84 315.5 271 62.7
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 6.6e-84 314.7 288 60.4
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.5e-83 313.5 227 67.8
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.9e-83 313.2 274 58.8
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 3.3e-83 312.4 191 78.5
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 5.6e-83 311.6 262 61.1
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.8e-81 306.6 224 66.5
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 6.8e-81 304.7 241 62.2
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 2.6e-80 302.8 253 61.3
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.7e-79 300.1 227 67.0
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.2e-77 293.9 248 62.1
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 3.0e-76 289.3 222 64.0
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 8.7e-76 287.7 256 61.3
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 3.3e-75 285.8 186 76.3
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 5.6e-75 285.0 307 54.1
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 4.0e-73 278.9 246 58.1
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.9e-71 272.7 198 64.6
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.2e-69 267.3 220 59.1
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 8.1e-66 254.6 202 62.9
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 3.1e-65 252.7 200 59.0
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.3e-63 247.3 205 59.0
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 2.9e-63 246.1 219 60.3
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.0e-60 237.7 271 51.3
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 4.3e-59 232.3 183 62.3
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 9.6e-59 231.1 230 53.9
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.1e-58 229.9 278 50.0
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 4.5e-56 222.2 260 48.5
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 7.6e-56 221.5 259 52.5
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 6.0e-53 211.8 108 98.1
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 5.7e-51 205.3 153 69.3
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.7e-51 205.3 139 73.4
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 2.6e-48 196.4 135 74.1
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 2.6e-48 196.4 135 74.1
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 2.6e-48 196.4 135 74.1
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.1e-45 185.3 105 85.7
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.6e-42 177.2 153 60.8
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.8e-42 175.6 153 60.1
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.8e-42 175.6 153 60.1
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 7.7e-40 168.3 215 51.2
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 7.9e-37 158.3 114 64.9
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 6.9e-33 145.2 200 43.5
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 9.1e-33 144.8 85 81.2
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 2.7e-29 133.3 100 70.0
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 1.7e-26 124.0 73 82.2
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 1.7e-26 124.0 73 82.2
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 6.3e-26 122.1 72 81.9
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.6e-21 107.5 79 68.4
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 5.7e-19 99.0 95 56.8
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 5.7e-19 99.0 128 46.1
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 2.0e-16 90.5 60 65.0
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 3.2e-14 83.2 59 67.8
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.2e-14 82.8 106 44.3
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 6.1e-13 79.0 231 29.4
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 7.5e-11 72.0 86 46.5
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.7e-10 70.9 58 63.8
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.1e-06 58.2 37 70.3


User provided reference genes

Program Settings