Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 1.1e-139 500.0 244 100.0
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 2.5e-117 425.6 244 82.8
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 2.8e-116 422.2 244 83.2
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 6.9e-115 417.5 244 79.9
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 1.3e-113 413.3 244 79.1
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.3e-113 413.3 244 79.1
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 2.2e-113 412.5 242 80.2
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.2e-113 412.5 244 79.9
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 2.2e-113 412.5 244 78.7
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 2.2e-113 412.5 244 78.7
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 2.9e-113 412.1 244 79.9
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 2.9e-113 412.1 245 78.8
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 2.9e-113 412.1 244 78.3
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 1.4e-112 409.8 244 81.1
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 1.4e-112 409.8 242 80.6
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 1.9e-112 409.5 244 78.3
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 1.2e-111 406.8 244 77.0
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.6e-111 406.4 244 79.1
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 2.7e-111 405.6 244 79.9
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 4.6e-111 404.8 244 77.9
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 1.0e-110 403.7 244 77.5
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 1.0e-110 403.7 244 78.7
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 1.3e-110 403.3 244 77.9
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.3e-110 402.5 244 78.7
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 3.0e-110 402.1 244 78.3
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.6e-110 401.0 244 77.9
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 1.1e-109 400.2 244 75.8
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 1.5e-109 399.8 244 76.2
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 1.9e-109 399.4 244 77.9
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 2.5e-109 399.1 244 76.6
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 4.3e-109 398.3 244 76.6
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 4.3e-109 398.3 242 77.3
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 7.3e-109 397.5 242 77.3
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 7.3e-109 397.5 244 76.2
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 7.3e-109 397.5 244 77.9
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 9.6e-109 397.1 244 77.0
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 8.1e-108 394.0 244 76.6
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.1e-107 393.7 230 80.9
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 75.4
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 76.6
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 76.2
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 75.4
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 2.4e-107 392.5 244 75.8
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 4.0e-107 391.7 244 75.4
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 5.3e-107 391.3 244 78.3
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 5.3e-107 391.3 245 75.1
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.2e-106 390.2 244 75.8
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 1.2e-106 390.2 260 72.7
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 1.5e-106 389.8 244 74.2
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 1.5e-106 389.8 244 77.0
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 1.5e-106 389.8 244 75.0
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 1.5e-106 389.8 244 75.4
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 2.0e-106 389.4 244 74.2
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 7.6e-106 387.5 244 73.8
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 9.9e-106 387.1 244 73.0
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 9.9e-106 387.1 245 74.3
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 9.9e-106 387.1 236 78.0
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 1.3e-105 386.7 244 75.8
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 2.9e-105 385.6 244 73.8
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 2.9e-105 385.6 245 74.7
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 6.4e-105 384.4 244 73.0
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 6.4e-105 384.4 244 73.4
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.1e-104 383.6 245 73.5
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 1.1e-104 383.6 242 74.4
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 5.4e-104 381.3 245 73.1
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 5.4e-104 381.3 233 76.4
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 7.1e-104 380.9 245 72.7
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 7.1e-104 380.9 245 75.1
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 9.3e-104 380.6 245 73.5
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 9.3e-104 380.6 245 73.5
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 1.2e-103 380.2 229 79.0
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 7.9e-103 377.5 275 68.4
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 1.0e-102 377.1 285 67.4
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 1.8e-102 376.3 245 72.7
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 2.3e-102 375.9 244 74.6
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 1.1e-101 373.6 229 77.7
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 3.3e-101 372.1 231 76.2
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 2.1e-100 369.4 214 79.4
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 6.2e-100 367.9 276 67.0
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 2.4e-99 365.9 234 73.5
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.2e-98 363.6 296 62.2
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 2.6e-98 362.5 254 68.9
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 4.5e-98 361.7 235 70.6
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.3e-97 360.1 244 68.9
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 6.4e-97 357.8 244 68.0
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.9e-96 356.3 244 68.9
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 7.1e-96 354.4 245 70.2
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 2.7e-95 352.4 244 68.0
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 1.1e-93 347.1 244 69.3
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 1.9e-93 346.3 328 57.3
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 6.2e-92 341.3 205 76.6
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 1.8e-91 339.7 208 74.5
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 5.3e-91 338.2 235 68.1
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 5.5e-88 328.2 252 60.3
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.7e-87 325.9 205 75.6
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 3.9e-86 322.0 281 56.6
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 5.1e-86 321.6 206 74.3
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 5.7e-85 318.2 250 57.6
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 7.2e-80 301.2 244 62.3
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.7e-79 299.3 302 53.6
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 5.7e-77 291.6 220 67.3
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 2.2e-76 289.7 244 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 3.2e-72 275.8 316 45.9
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 3.8e-65 252.3 251 49.8
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 1.1e-64 250.8 250 50.8
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.2e-55 220.7 256 43.0
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 2.7e-55 219.5 239 45.2
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.0e-54 216.1 246 47.2
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 4.0e-54 215.7 339 41.6
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.8e-51 206.8 147 71.4
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 5.9e-50 201.8 110 81.8
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.7e-47 193.0 126 74.6
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 7.0e-43 178.3 120 68.3
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 5.4e-35 152.1 83 79.5
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.5e-32 143.3 97 73.2
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 3.9e-25 119.4 59 86.4
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.6e-25 118.6 83 67.5
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.6e-25 118.6 83 67.5
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 7.5e-21 105.1 75 66.7
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 9.8e-21 104.8 94 56.4
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 1.2e-18 97.8 122 48.4
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 1.6e-18 97.4 63 74.6
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 2.1e-15 87.0 49 79.6
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 1.1e-14 84.7 49 77.6
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 1.1e-14 84.7 49 77.6
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 4.9e-12 75.9 43 76.7
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 4.6e-10 69.3 101 37.6
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 1.0e-09 68.2 37 75.7
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 8.6e-09 65.1 38 73.7
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 1.2e-07 61.2 70 40.0
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 3.6e-07 59.7 77 45.5
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 4.7e-07 59.3 79 41.8
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 4.7e-07 59.3 94 36.2
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.1e-06 58.2 77 37.7
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 1.4e-06 57.8 92 38.0
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 2.4e-06 57.0 76 38.2
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 4.0e-06 56.2 81 39.5
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 4.0e-06 56.2 75 36.0
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 5.2e-06 55.8 81 38.3
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 5.2e-06 55.8 75 38.7


User provided reference genes

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