Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 0.0e+00 1218.4 590 100.0
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.2e-293 1012.7 597 81.9
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 4.9e-292 1007.3 597 81.2
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 4.9e-292 1007.3 596 81.4
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 6.4e-292 1006.9 598 81.1
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 1.1e-291 1006.1 591 82.2
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.2e-290 1002.7 598 80.9
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 2.3e-289 998.4 598 80.6
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 3.0e-289 998.0 598 80.6
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 1.9e-288 995.3 598 80.3
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.2e-287 992.6 582 81.1
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.4e-286 989.2 597 79.2
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 3.4e-285 984.6 586 81.6
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 4.4e-285 984.2 594 81.0
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 7.6e-285 983.4 597 78.6
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.6e-282 975.7 591 80.0
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 4.6e-282 974.2 583 80.3
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 3.0e-281 971.5 592 79.9
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 8.7e-281 969.9 582 80.2
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 1.9e-280 968.8 590 78.8
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.5e-280 968.4 582 81.1
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 3.3e-280 968.0 574 79.3
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 3.3e-280 968.0 582 79.9
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 5.6e-280 967.2 554 83.4
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 3.6e-279 964.5 591 78.5
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 8.1e-279 963.4 592 79.4
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 3.1e-278 961.4 582 78.5
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.2e-277 959.5 582 79.9
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 7.6e-277 956.8 595 76.6
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 9.9e-277 956.4 578 80.3
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 4.9e-276 954.1 608 75.2
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 2.7e-274 948.3 582 79.2
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 1.7e-273 945.7 624 73.1
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 3.0e-273 944.9 574 77.9
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 5.1e-273 944.1 582 78.2
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 6.6e-273 943.7 577 77.8
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.9e-272 942.2 578 77.9
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.9e-272 942.2 589 77.2
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.1e-270 936.4 584 77.4
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 6.9e-270 933.7 579 76.9
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 1.2e-269 932.9 568 77.1
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.2e-269 932.9 579 76.9
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 2.0e-269 932.2 599 74.3
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 3.4e-269 931.4 576 76.6
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 5.8e-269 930.6 592 76.7
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 7.6e-269 930.2 568 76.6
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 9.9e-269 929.9 544 80.7
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 1.7e-268 929.1 571 77.6
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.7e-268 929.1 580 76.4
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 4.9e-268 927.5 591 77.0
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 4.9e-268 927.5 585 75.6
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.1e-267 926.4 599 73.6
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 5.5e-267 924.1 599 74.6
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 9.3e-267 923.3 597 74.2
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.2e-266 922.9 597 74.2
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 2.7e-266 921.8 597 73.9
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 4.6e-266 921.0 584 76.9
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 1.5e-264 916.0 576 76.0
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.9e-264 915.6 622 73.5
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 3.3e-264 914.8 587 76.5
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 3.3e-264 914.8 575 76.0
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 9.6e-264 913.3 568 75.5
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 1.3e-263 912.9 613 71.6
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 3.7e-263 911.4 574 75.3
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 6.2e-263 910.6 590 73.1
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 1.1e-262 909.8 566 76.7
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.8e-262 909.1 569 75.7
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 7.6e-261 903.7 598 72.9
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 1.0e-260 903.3 570 75.1
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.2e-260 902.1 555 78.6
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.2e-259 898.3 579 74.8
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 4.2e-259 897.9 568 74.5
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 9.3e-259 896.7 538 79.2
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 1.6e-258 896.0 568 74.5
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 2.1e-258 895.6 582 74.6
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.8e-257 892.5 583 73.1
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 2.3e-257 892.1 582 74.2
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 8.7e-257 890.2 574 74.2
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 5.7e-256 887.5 590 71.5
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 5.7e-256 887.5 566 74.4
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 7.4e-256 887.1 583 72.7
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.3e-255 886.3 555 79.1
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.6e-255 885.9 574 74.2
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.4e-254 882.9 583 72.4
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.8e-254 882.5 577 73.1
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 2.4e-254 882.1 577 72.8
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 3.1e-254 881.7 572 73.8
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 3.4e-253 878.2 571 70.4
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 4.5e-253 877.9 537 77.7
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 7.6e-253 877.1 564 74.5
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.1e-250 869.0 592 70.3
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.1e-250 869.0 572 76.7
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 1.3e-249 866.3 585 71.8
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 2.3e-249 865.5 564 72.9
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 6.7e-249 864.0 555 73.5
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 1.9e-248 862.4 584 71.7
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 3.3e-248 861.7 582 72.5
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 4.3e-248 861.3 566 73.0
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 5.7e-248 860.9 584 71.7
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 5.7e-248 860.9 564 73.8
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.6e-247 859.4 569 72.8
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.6e-247 859.4 584 71.1
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 1.6e-247 859.4 584 71.1
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 2.8e-247 858.6 582 72.2
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 2.8e-247 858.6 582 72.2
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 2.8e-247 858.6 584 70.9
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.5e-245 852.8 596 70.0
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.9e-243 845.9 557 74.3
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.9e-243 845.9 578 71.3
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 2.5e-243 845.5 577 70.9
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 4.6e-242 841.3 584 71.6
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 3.1e-238 828.6 538 74.0
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 2.0e-237 825.9 564 71.5
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 6.1e-234 814.3 515 76.5
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 3.9e-233 811.6 573 71.0
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 2.0e-232 809.3 537 72.1
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 6.3e-231 804.3 579 67.7
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 3.1e-230 802.0 569 70.5
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 1.5e-224 783.1 563 68.6
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.8e-222 776.2 534 70.0
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.5e-219 766.5 579 66.1
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 1.5e-219 766.5 583 64.0
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 4.7e-218 761.5 566 65.5
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.7e-202 708.4 497 69.0
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 5.2e-201 704.9 580 61.0
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 4.1e-198 695.3 598 59.4
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 8.9e-193 677.6 588 59.4
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.5e-187 660.2 436 73.9
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 6.8e-185 651.4 563 58.4
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 4.5e-152 542.3 375 71.5
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 5.3e-137 492.3 298 77.5
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 9.0e-137 491.5 318 74.5
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.3e-132 477.6 286 82.5
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.0e-132 476.5 355 67.3
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 2.0e-123 447.2 576 46.0
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.4e-113 414.5 294 69.0
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 1.8e-113 414.1 356 61.2
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.1e-105 388.3 217 76.0
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.0e-100 369.8 217 81.1
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 3.2e-94 350.1 290 58.6
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 5.0e-87 326.2 288 58.7
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.2e-84 316.2 244 68.4
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 5.0e-79 299.7 592 32.4
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 2.4e-73 280.8 218 64.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.2e-67 261.9 201 65.7
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 4.9e-66 256.5 145 76.6
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 6.4e-58 229.6 466 30.3
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 6.6e-55 219.5 228 48.7
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.4e-52 211.8 128 75.8
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.1e-37 161.4 111 64.9
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 6.9e-36 156.4 130 60.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.3e-31 141.4 106 62.3
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 1.1e-28 132.5 100 63.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 5.3e-28 130.2 150 48.0
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.0e-26 125.9 123 49.6
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 3.5e-24 117.5 121 52.9
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 5.7e-22 110.2 54 85.2
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 4.2e-17 94.0 56 75.0
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 1.8e-15 88.6 79 54.4
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.4e-11 74.3 43 79.1
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 7.9e-08 63.2 63 39.7
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 3.9e-07 60.8 76 34.2
FvH4_6g11150 Fragaria vesca HOM05D009507 ORTHO05D022560 1.5e-06 58.9 77 28.6
FAN14G0535 Fragaria x ananassa HOM05D009507 ORTHO05D022560 1.5e-06 58.9 77 28.6
Cpa.g.sc17.216 Carica papaya HOM05D000082 ORTHO05D000038 4.4e-06 57.4 161 26.7
FAN27G2732 Fragaria x ananassa HOM05D000082 ORTHO05D000038 4.4e-06 57.4 76 28.9
Cpa.g.c33379.2 Carica papaya HOM05D000082 ORTHO05D000038 7.4e-06 56.6 161 26.7
Ciclev10023831m.g Citrus clementina HOM05D000082 ORTHO05D000038 7.4e-06 56.6 75 33.3
MELO3C021991.2 Cucumis melo HOM05D000082 ORTHO05D000038 7.4e-06 56.6 55 34.5
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 7.4e-06 56.6 63 34.9
unitig_748.g7202 Utricularia gibba HOM05D000086 ORTHO05D001065 7.4e-06 56.6 54 44.4
BcaB07g30757 Brassica carinata HOM05D000341 ORTHO05D006763 9.7e-06 56.2 62 37.1
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 9.7e-06 56.2 55 41.8
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 9.7e-06 56.2 55 41.8
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 9.7e-06 56.2 54 37.0


User provided reference genes

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