Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 4.3e-150 534.6 271 100.0
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.8e-117 424.9 271 78.6
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 6.2e-117 424.5 271 78.2
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 3.1e-116 422.2 271 77.1
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 9.0e-116 420.6 273 79.1
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 2.6e-115 419.1 271 78.2
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 7.6e-115 417.5 271 78.2
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 1.3e-114 416.8 271 77.5
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 2.2e-114 416.0 273 77.3
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 8.4e-114 414.1 271 76.4
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 8.4e-114 414.1 273 76.9
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.1e-113 413.7 271 78.2
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 7.1e-113 411.0 273 75.8
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.2e-112 410.2 270 76.3
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 1.2e-112 410.2 272 74.6
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 1.6e-112 409.8 270 76.3
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.1e-112 409.5 281 74.7
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 2.1e-112 409.5 270 76.7
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 2.7e-112 409.1 271 76.8
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 7.9e-112 407.5 272 76.5
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 7.9e-112 407.5 271 75.3
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 7.9e-112 407.5 273 74.4
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 1.0e-111 407.1 269 75.8
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.3e-111 406.8 270 75.6
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.3e-111 406.8 273 79.1
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.3e-111 406.8 273 75.1
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.8e-111 406.4 271 76.4
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.8e-111 406.4 271 74.9
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 2.3e-111 406.0 271 76.4
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 3.0e-111 405.6 271 76.0
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 3.9e-111 405.2 269 75.5
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 6.7e-111 404.4 272 75.7
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 8.7e-111 404.1 271 75.3
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 8.7e-111 404.1 271 75.3
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 2.5e-110 402.5 268 76.1
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 3.3e-110 402.1 274 74.5
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.3e-110 402.1 271 74.2
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.3e-110 402.1 271 74.2
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 4.3e-110 401.7 271 74.9
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 4.3e-110 401.7 270 75.6
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 5.6e-110 401.4 271 74.2
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 9.6e-110 400.6 272 74.6
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 9.6e-110 400.6 272 75.7
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 1.6e-109 399.8 270 74.4
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 1.6e-109 399.8 272 73.5
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 2.1e-109 399.4 272 74.3
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 2.1e-109 399.4 270 75.9
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 2.4e-108 396.0 274 73.7
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.4e-108 396.0 271 74.2
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 3.1e-108 395.6 271 72.7
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 4.0e-108 395.2 274 75.2
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 5.3e-108 394.8 272 73.9
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 6.9e-108 394.4 271 73.8
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 6.9e-108 394.4 273 75.8
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 1.5e-107 393.3 270 74.4
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 2.0e-107 392.9 271 73.4
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 2.0e-107 392.9 271 73.8
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 2.6e-107 392.5 271 72.0
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.6e-107 392.5 273 73.3
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.8e-107 391.3 273 73.6
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 7.6e-107 391.0 284 71.5
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.0e-106 390.6 271 74.9
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.2e-106 389.4 273 72.9
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.2e-106 389.4 273 72.9
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 2.9e-106 389.0 283 71.0
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.5e-106 387.9 271 72.3
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 8.4e-106 387.5 273 72.5
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 1.1e-105 387.1 271 74.9
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 2.5e-105 386.0 330 62.7
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 2.5e-105 386.0 285 70.5
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.5e-105 386.0 271 72.0
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.5e-105 386.0 271 72.0
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.5e-105 386.0 271 72.3
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 3.2e-105 385.6 273 74.4
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.3e-105 384.0 271 72.0
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 9.3e-105 384.0 271 73.1
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 1.2e-104 383.6 271 73.1
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.6e-104 383.3 271 72.0
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 1.0e-103 380.6 271 70.8
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.3e-103 380.2 273 71.8
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 3.0e-103 379.0 298 68.5
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 8.7e-103 377.5 272 71.0
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 8.7e-103 377.5 271 72.7
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 2.5e-102 375.9 272 70.6
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 5.7e-102 374.8 271 70.1
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 1.6e-101 373.2 271 70.8
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.6e-101 373.2 260 73.5
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 2.2e-101 372.9 343 60.1
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 2.2e-101 372.9 296 66.6
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 2.8e-101 372.5 273 70.0
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 2.8e-101 372.5 273 70.0
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 3.7e-101 372.1 271 71.2
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 1.1e-100 370.5 271 69.0
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.8e-100 369.8 306 64.7
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.8e-100 369.8 306 64.7
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.8e-100 369.8 274 69.7
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 2.4e-100 369.4 256 74.2
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 2.4e-100 369.4 254 72.0
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.2e-99 367.1 286 67.1
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.5e-99 366.7 276 68.8
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 4.5e-99 365.2 274 68.2
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.0e-98 364.0 236 78.0
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 3.8e-98 362.1 273 68.9
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 6.5e-98 361.3 272 70.6
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 1.9e-97 359.8 271 68.6
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 2.5e-97 359.4 272 69.9
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 2.5e-97 359.4 293 61.8
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.4e-95 353.6 273 67.4
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.8e-95 353.2 273 66.7
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 2.3e-95 352.8 272 69.5
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 3.9e-95 352.1 270 66.7
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.9e-95 352.1 273 67.4
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 1.5e-94 350.1 271 66.8
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 1.5e-94 350.1 230 75.2
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.1e-92 344.0 230 75.2
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 2.4e-92 342.8 275 66.2
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 4.1e-92 342.0 331 57.7
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.0e-91 339.7 231 72.7
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 1.7e-90 336.7 318 58.2
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 5.5e-89 331.6 276 63.8
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 1.2e-88 330.5 278 65.5
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.7e-88 329.3 274 63.1
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 2.7e-88 329.3 268 64.6
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 6.1e-88 328.2 232 72.4
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 5.7e-86 321.6 235 68.1
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 1.8e-84 316.6 227 70.9
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 4.2e-81 305.4 230 66.5
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 9.4e-81 304.3 268 60.8
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 6.1e-80 301.6 337 52.2
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 1.4e-79 300.4 262 62.2
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 1.4e-79 300.4 360 50.8
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 1.4e-79 300.4 231 68.4
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.8e-79 300.1 277 60.6
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.2e-75 287.3 271 60.1
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.9e-75 285.0 285 56.8
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 5.0e-74 282.0 228 65.4
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 5.3e-68 261.9 235 60.9
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 3.5e-67 259.2 259 57.5
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 2.9e-66 256.1 176 73.3
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 8.5e-66 254.6 174 72.4
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 1.2e-64 250.8 180 70.6
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.7e-64 249.6 201 66.2
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 2.7e-64 249.6 227 60.4
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 6.1e-64 248.4 270 52.2
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 1.0e-63 247.7 263 53.6
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.3e-61 240.7 260 50.4
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 4.8e-61 238.8 273 49.5
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 8.3e-61 238.0 264 52.7
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 2.4e-60 236.5 173 69.4
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 7.7e-59 231.5 162 73.5
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.3e-57 226.1 176 66.5
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 3.7e-53 212.6 162 64.8
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 2.7e-51 206.5 169 63.3
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 5.9e-51 205.3 161 62.7
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 2.1e-48 196.8 255 48.6
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 2.8e-48 196.4 131 71.0
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 4.0e-47 192.6 154 61.7
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 8.9e-47 191.4 213 52.1
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 3.4e-46 189.5 234 47.0
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.1e-44 182.6 196 52.0
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.3e-42 176.8 126 68.3
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 2.3e-42 176.8 133 70.7
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 1.1e-41 174.5 152 63.2
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.3e-39 166.8 232 44.8
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.2e-37 160.2 182 48.9
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 2.4e-36 156.8 142 57.7
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.1e-35 153.7 162 50.6
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 5.2e-31 139.0 272 39.3
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 5.4e-28 129.0 88 72.7
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 6.0e-27 125.6 91 68.1
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.2e-22 111.3 72 73.6
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.4e-22 109.8 149 47.7
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 3.5e-19 99.8 71 66.2
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.3e-18 97.1 68 70.6
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 2.5e-17 93.6 153 41.8
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 1.1e-15 88.2 74 59.5
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 7.3e-09 65.5 34 88.2
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 9.6e-09 65.1 138 33.3
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 4.8e-08 62.8 42 73.8
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 1.8e-07 60.8 57 57.9


User provided reference genes

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