Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 2.6e-180 635.2 303 100.0
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 1.5e-124 449.9 300 71.3
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 1.5e-124 449.9 300 71.3
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 1.5e-124 449.9 300 71.3
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.3e-123 446.8 296 72.3
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.5e-122 442.6 297 71.7
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 7.2e-122 441.0 297 71.7
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 1.2e-121 440.3 297 70.4
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 3.9e-120 435.3 316 66.8
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 5.2e-120 434.9 297 70.7
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 5.2e-120 434.9 297 70.7
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 4.4e-119 431.8 298 68.1
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 4.4e-119 431.8 300 69.0
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 5.7e-119 431.4 308 66.2
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 2.2e-118 429.5 296 66.6
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 7.0e-117 424.5 272 71.0
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 2.0e-116 422.9 303 66.0
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 2.6e-116 422.5 306 65.4
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 2.6e-116 422.5 303 65.0
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 2.6e-116 422.5 303 68.0
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 3.5e-116 422.2 315 65.7
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 5.9e-116 421.4 307 64.8
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 1.7e-115 419.9 297 66.3
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 2.2e-115 419.5 296 68.9
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.1e-114 417.2 306 67.0
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 1.5e-114 416.8 299 64.5
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 2.5e-114 416.0 300 64.3
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 2.7e-113 412.5 296 64.2
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 1.4e-112 410.2 237 76.8
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 3.0e-112 409.1 300 65.3
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 4.0e-112 408.7 270 68.9
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 8.8e-112 407.5 272 68.4
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 2.0e-111 406.4 306 62.7
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 4.4e-111 405.2 301 64.5
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 4.4e-111 405.2 306 62.7
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 4.4e-111 405.2 306 62.4
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 1.3e-110 403.7 297 63.3
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 1.3e-110 403.7 287 66.9
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 2.2e-110 402.9 304 63.5
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 2.8e-110 402.5 303 60.4
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 3.7e-110 402.1 297 63.0
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 6.3e-110 401.4 296 62.8
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 6.3e-110 401.4 297 62.6
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 6.3e-110 401.4 307 63.5
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 8.2e-110 401.0 297 63.3
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 1.1e-109 400.6 265 70.9
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 1.4e-109 400.2 246 74.0
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.4e-109 399.4 302 61.6
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 3.1e-109 399.1 301 63.8
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 4.1e-109 398.7 272 65.8
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 9.1e-109 397.5 302 62.3
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.2e-108 397.1 269 67.3
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.2e-108 397.1 290 65.2
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 1.2e-108 397.1 282 66.0
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 1.6e-108 396.7 288 62.8
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 4.5e-108 395.2 295 62.4
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 4.5e-108 395.2 306 62.1
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.5e-108 395.2 298 62.8
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 5.9e-108 394.8 301 61.1
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 7.7e-108 394.4 305 61.0
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.0e-107 394.0 287 65.2
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-107 393.7 307 60.9
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.3e-107 393.7 305 60.7
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 2.2e-107 392.9 298 62.8
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.2e-107 392.9 298 61.7
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 5.0e-107 391.7 292 64.0
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 8.5e-107 391.0 298 62.4
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 4.2e-106 388.7 304 62.2
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 7.2e-106 387.9 307 60.6
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 9.4e-106 387.5 293 64.2
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 9.4e-106 387.5 299 60.9
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 9.4e-106 387.5 299 60.9
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 9.4e-106 387.5 299 60.9
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 9.4e-106 387.5 275 65.1
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 2.1e-105 386.3 307 60.9
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 2.1e-105 386.3 299 62.2
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 2.7e-105 386.0 253 69.2
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.0e-104 384.0 264 65.5
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 3.4e-103 379.0 296 58.8
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 5.7e-103 378.3 316 61.1
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 5.7e-103 378.3 264 64.0
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 9.8e-103 377.5 250 68.4
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.7e-102 375.6 326 55.5
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 3.7e-102 375.6 264 64.4
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 4.8e-102 375.2 235 69.8
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.1e-101 374.0 312 58.7
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 7.0e-101 371.3 308 59.4
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 2.0e-100 369.8 296 59.5
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 1.0e-99 367.5 220 75.0
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 1.7e-99 366.7 273 61.2
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 5.0e-99 365.2 306 57.2
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 6.5e-99 364.8 298 57.7
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.1e-98 364.0 272 62.9
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 2.5e-98 362.8 226 70.4
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 3.2e-98 362.5 298 58.1
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 4.2e-98 362.1 297 54.2
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 5.5e-98 361.7 270 59.3
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 7.2e-98 361.3 274 60.6
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 1.4e-96 357.1 273 58.6
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 8.8e-96 354.4 301 55.5
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 8.8e-96 354.4 267 60.3
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.0e-95 353.2 299 55.9
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 3.4e-95 352.4 296 56.1
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 6.3e-94 348.2 298 54.4
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 6.3e-94 348.2 256 64.8
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.1e-93 347.4 302 55.3
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.4e-93 347.1 291 57.4
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 3.1e-93 345.9 269 56.1
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 5.4e-93 345.1 227 68.3
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 9.2e-93 344.4 232 66.8
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.0e-92 343.2 257 60.7
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.7e-91 340.1 269 55.4
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 6.6e-91 338.2 269 54.6
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 8.6e-91 337.8 253 62.1
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 8.6e-91 337.8 269 55.4
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 8.6e-91 337.8 234 65.0
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.1e-90 337.4 305 53.8
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 1.9e-90 336.7 269 56.9
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 1.9e-90 336.7 244 61.9
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 2.3e-88 329.7 229 64.6
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 2.3e-88 329.7 237 63.7
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 4.0e-88 328.9 228 64.9
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 4.0e-88 328.9 192 75.0
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 8.9e-88 327.8 266 56.0
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 1.2e-87 327.4 266 57.1
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 1.2e-87 327.4 207 71.5
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 2.6e-87 326.2 228 61.8
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 2.2e-86 323.2 266 56.0
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 3.2e-85 319.3 228 65.4
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 5.9e-84 315.1 303 51.8
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 1.3e-83 313.9 295 52.5
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 1.3e-83 313.9 295 52.5
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-83 313.9 295 52.5
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 1.3e-83 313.9 295 52.5
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 1.3e-83 313.9 196 71.9
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 1.1e-82 310.8 266 54.9
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 2.8e-81 306.2 266 54.1
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 1.1e-80 304.3 226 63.3
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 7.8e-76 288.1 241 58.9
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 6.6e-75 285.0 289 50.2
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 1.9e-74 283.5 291 47.1
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 2.5e-74 283.1 219 59.4
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 3.4e-71 272.7 228 53.9
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 2.2e-70 270.0 263 49.0
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 2.9e-70 269.6 199 60.8
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 6.4e-70 268.5 259 49.0
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.4e-69 266.5 268 53.4
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.0e-67 261.2 292 50.0
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 1.0e-67 261.2 158 72.8
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.3e-67 260.8 228 54.8
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 1.7e-67 260.4 241 51.5
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 6.6e-67 258.5 230 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 1.2e-65 254.2 239 50.6
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 2.1e-65 253.4 217 53.5
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.8e-65 253.1 227 52.9
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 4.7e-65 252.3 276 44.6
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 5.4e-61 238.8 246 45.9
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 1.2e-60 237.7 188 57.4
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 3.9e-59 232.6 244 46.7
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.9e-58 230.3 234 48.7
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 4.3e-58 229.2 177 63.3
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 2.6e-55 219.9 191 50.8
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 3.4e-55 219.5 244 45.1
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 1.5e-50 204.1 187 50.8
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 1.9e-50 203.8 242 46.7
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 9.6e-50 201.4 153 60.1
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.1e-49 200.3 134 64.9
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 1.4e-48 197.6 166 56.6
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 4.5e-47 192.6 221 41.6
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 6.4e-46 188.7 318 34.6
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.8e-38 162.9 99 68.7
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.8e-38 162.9 109 67.0
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 2.1e-33 147.1 87 73.6
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 2.1e-28 130.6 96 59.4
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 1.3e-17 94.7 60 68.3
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 8.5e-14 82.0 74 54.1
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 4.2e-13 79.7 62 61.3
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 1.7e-06 57.8 41 63.4


User provided reference genes

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