Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 8.2e-247 856.7 452 100.0
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 6.4e-199 697.6 455 81.1
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.7e-197 692.2 457 80.3
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 2.5e-195 685.6 447 79.9
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 8.0e-194 680.6 454 78.4
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 9.8e-192 673.7 456 78.3
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.6e-189 666.4 454 77.8
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 2.7e-189 665.6 450 77.3
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.7e-189 665.6 450 77.6
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.7e-189 665.6 450 77.3
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.0e-188 662.1 457 77.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 5.0e-188 661.4 460 77.8
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 9.5e-187 657.1 457 76.4
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 9.5e-187 657.1 455 78.7
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 2.8e-186 655.6 455 75.2
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 4.7e-186 654.8 450 75.1
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.8e-185 652.9 450 75.8
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.1e-185 652.1 456 75.0
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 8.9e-185 650.6 457 75.3
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.5e-184 649.8 455 77.4
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.5e-184 649.8 457 74.4
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.4e-184 648.7 459 75.6
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 4.4e-184 648.3 440 77.5
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 4.4e-184 648.3 440 76.6
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 7.5e-184 647.5 455 73.4
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 9.9e-184 647.1 450 75.6
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.7e-183 646.4 451 76.3
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 3.7e-183 645.2 451 76.3
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 6.4e-183 644.4 451 76.3
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 2.4e-182 642.5 451 74.9
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 9.2e-182 640.6 453 75.1
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.6e-181 639.8 456 76.3
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.1e-181 639.4 454 76.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 7.8e-181 637.5 454 74.9
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.0e-180 637.1 453 75.1
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.3e-180 636.7 452 74.8
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.7e-180 636.3 455 75.6
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.3e-180 636.0 463 72.8
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 5.1e-180 634.8 454 74.2
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.5e-179 633.3 453 74.0
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.9e-179 632.9 425 77.9
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 3.3e-179 632.1 455 75.6
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.2e-178 630.2 460 74.1
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 6.2e-178 627.9 447 75.6
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 6.2e-178 627.9 456 75.2
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 8.1e-178 627.5 457 74.2
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.1e-177 625.5 448 74.8
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 5.2e-177 624.8 448 74.8
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 8.9e-177 624.0 454 73.6
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 2.0e-176 622.9 457 71.1
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 3.4e-176 622.1 445 74.8
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 5.8e-176 621.3 459 70.6
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.2e-175 619.4 448 73.9
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 6.4e-175 617.8 454 72.7
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 4.1e-174 615.1 450 72.7
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 4.1e-174 615.1 458 71.8
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 2.1e-173 612.8 443 73.8
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 2.3e-172 609.4 457 71.1
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 8.7e-172 607.4 457 71.3
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 2.5e-171 605.9 440 72.0
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.1e-170 602.8 361 84.8
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 3.1e-169 599.0 451 71.4
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 5.2e-169 598.2 450 69.6
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.2e-168 597.0 456 70.8
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.3e-167 593.6 434 71.9
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.3e-167 593.6 458 71.4
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.9e-167 592.4 454 70.0
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 6.4e-167 591.3 441 71.2
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 6.4e-167 591.3 423 73.0
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 6.4e-167 591.3 463 69.3
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.9e-166 589.7 453 70.9
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.4e-166 589.3 453 70.0
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 1.6e-165 586.6 451 68.5
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.7e-165 585.9 452 69.7
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 7.8e-165 584.3 457 69.8
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.0e-164 583.9 430 71.6
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 1.0e-164 583.9 425 71.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.3e-164 582.8 457 69.1
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 3.9e-164 582.0 425 71.3
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 5.1e-164 581.6 445 70.3
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 8.7e-164 580.9 454 69.4
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 3.6e-162 575.5 441 69.6
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 3.6e-162 575.5 441 69.6
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 3.6e-162 575.5 441 69.6
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 4.8e-162 575.1 451 67.8
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.1e-161 573.9 420 71.0
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.1e-161 573.9 451 67.8
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.8e-161 573.2 450 68.0
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 3.1e-161 572.4 451 67.8
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.1e-161 572.4 460 68.5
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.0e-161 572.0 459 68.6
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.0e-161 572.0 459 68.6
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.1e-158 563.9 451 68.3
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.6e-157 560.1 402 73.9
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 7.9e-157 557.8 361 79.5
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.0e-156 555.8 437 67.7
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.0e-156 555.8 437 67.7
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 4.8e-154 548.5 340 81.2
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.4e-150 537.0 364 74.5
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 8.2e-146 521.2 458 63.5
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.1e-145 519.2 455 64.4
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.1e-140 501.9 319 79.9
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.8e-137 493.4 455 60.4
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 4.2e-134 482.3 306 80.1
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 3.9e-132 475.7 310 78.4
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 1.2e-128 464.2 289 81.3
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.8e-122 443.0 281 79.4
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.5e-118 429.9 420 57.1
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 7.2e-118 428.3 370 60.8
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.6e-117 427.2 295 73.2
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 3.9e-116 422.5 372 60.2
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 6.7e-116 421.8 280 74.6
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.1e-115 421.0 375 59.5
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.4e-113 414.1 369 58.8
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.8e-111 406.0 399 53.6
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.5e-110 403.3 279 76.7
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 7.2e-102 375.2 366 55.7
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.2e-101 374.4 368 56.0
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.7e-101 373.2 300 65.0
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 3.1e-97 359.8 339 58.4
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.4e-97 359.0 366 53.8
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 4.5e-96 355.9 384 53.6
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 8.3e-90 335.1 355 51.0
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.8e-84 317.4 372 50.5
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 5.2e-84 315.8 375 47.2
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 2.2e-82 310.5 243 67.5
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.5e-70 271.2 329 49.8
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.8e-52 211.1 149 71.8
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 1.7e-50 204.5 342 40.6
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.5e-43 181.4 226 48.2
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.9e-42 177.2 164 56.7
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.5e-38 164.1 115 68.7
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 3.2e-33 147.1 142 52.8
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.0e-32 142.9 88 77.3
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.6e-30 135.6 107 62.6
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.1e-29 134.4 171 45.6
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 2.1e-24 117.9 73 80.8
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-21 108.6 87 70.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.3e-15 87.8 102 49.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.3e-13 82.0 75 54.7
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 5.5e-09 66.6 133 37.6
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.4e-09 65.9 73 54.8


User provided reference genes

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