Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 4.1e-182 642.1 586 100.0
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 4.2e-118 429.5 335 81.5
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 6.0e-117 425.6 334 81.4
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 3.9e-116 422.9 335 80.6
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 5.1e-116 422.5 335 80.9
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 1.1e-115 421.4 334 80.5
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.5e-112 411.0 336 79.2
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.5e-112 411.0 336 79.2
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 1.4e-110 404.4 334 79.3
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 9.3e-110 401.7 334 78.1
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 1.6e-109 401.0 334 78.1
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 2.1e-109 400.6 334 77.5
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 6.1e-109 399.1 337 77.7
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 6.1e-109 399.1 334 78.1
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 6.1e-109 399.1 337 76.9
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 1.3e-108 397.9 337 76.9
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 8.7e-108 395.2 331 77.0
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 1.1e-107 394.8 315 82.5
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 3.3e-107 393.3 335 77.6
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 4.3e-107 392.9 334 76.0
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 5.7e-107 392.5 337 76.3
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 1.3e-106 391.3 335 76.4
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 2.8e-106 390.2 336 75.6
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.8e-106 389.4 334 76.9
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 8.2e-106 388.7 334 75.4
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.8e-105 387.5 334 76.9
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.8e-105 387.5 305 82.3
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 1.8e-105 387.5 335 76.7
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 2.4e-105 387.1 334 76.9
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 3.1e-105 386.7 334 76.0
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 5.3e-105 386.0 334 76.6
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 5.3e-105 386.0 307 80.8
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 6.9e-105 385.6 304 82.6
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 9.1e-105 385.2 312 80.8
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 2.6e-104 383.6 335 76.4
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 3.4e-104 383.3 334 74.6
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 1.0e-103 381.7 336 74.4
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.0e-103 381.7 307 80.5
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 1.0e-103 381.7 344 75.9
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 3.8e-103 379.8 303 80.9
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 6.5e-103 379.0 335 75.8
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 8.5e-103 378.6 302 81.1
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 1.9e-102 377.5 295 83.1
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 3.2e-102 376.7 335 74.9
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 5.5e-102 375.9 318 77.4
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 9.4e-102 375.2 296 76.7
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 4.7e-101 372.9 334 72.5
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.0e-100 371.7 305 78.7
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.0e-100 371.7 295 84.1
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 1.0e-100 371.7 295 83.7
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 1.8e-100 370.9 295 82.0
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 2.3e-100 370.5 335 74.3
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 3.9e-100 369.8 306 79.1
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 3.9e-100 369.8 305 78.0
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 5.1e-100 369.4 305 79.0
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 5.1e-100 369.4 295 83.4
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 1.5e-99 367.9 307 76.5
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 1.5e-99 367.9 317 77.0
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 2.6e-99 367.1 335 73.4
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 2.6e-99 367.1 305 77.7
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 3.3e-99 366.7 307 72.0
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 2.2e-98 364.0 335 72.5
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 3.7e-98 363.2 303 79.2
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 4.8e-98 362.8 334 71.6
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 1.4e-97 361.3 331 73.1
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 1.8e-97 360.9 321 74.5
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 2.6e-96 357.1 306 77.1
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 7.7e-96 355.5 298 78.5
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 1.3e-95 354.8 299 77.9
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 2.2e-95 354.0 304 76.3
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 1.1e-94 351.7 302 78.1
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.1e-94 351.7 307 75.9
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 1.9e-94 350.9 303 76.2
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 3.2e-94 350.1 317 74.1
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 4.2e-94 349.7 318 71.7
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 3.6e-93 346.7 303 76.2
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 3.6e-93 346.7 306 74.5
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 6.1e-93 345.9 335 71.9
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 6.1e-93 345.9 337 54.9
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 6.1e-93 345.9 299 78.3
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 5.2e-92 342.8 303 59.1
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 5.2e-92 342.8 335 71.6
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 5.2e-92 342.8 339 55.8
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 6.7e-92 342.4 335 71.6
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 6.7e-92 342.4 302 74.5
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 1.5e-91 341.3 316 73.1
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 4.1e-89 333.2 331 69.5
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 9.1e-89 332.0 303 72.3
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 1.0e-87 328.6 335 69.6
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 5.0e-87 326.2 336 69.9
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 7.2e-86 322.4 316 72.5
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 1.5e-83 314.7 307 71.3
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 5.3e-81 306.2 293 75.8
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.6e-77 294.7 292 73.3
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 6.1e-77 292.7 291 69.8
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 6.8e-76 289.3 283 74.9
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 3.5e-72 276.9 315 49.8
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 2.0e-67 261.2 183 71.0
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 9.2e-65 252.3 211 86.3
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 9.2e-57 225.7 135 78.5
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 2.0e-51 208.0 161 62.7
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 1.7e-50 204.9 146 65.8
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 6.4e-50 203.0 196 82.1
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.6e-45 188.3 123 74.8
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 1.9e-41 174.9 103 84.5
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 5.6e-38 163.3 103 77.7
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 4.9e-34 150.2 261 51.3
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 4.1e-33 147.1 262 50.0
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 1.6e-29 135.2 298 35.2
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 2.4e-28 131.3 266 44.7
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 1.4e-25 122.1 82 73.2
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.7e-23 115.2 74 78.4
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 2.5e-22 111.3 78 70.5
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 1.7e-18 98.6 72 72.2
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 9.0e-12 76.3 56 73.2
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 2.1e-08 65.1 48 66.7
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 5.6e-06 57.0 31 90.3
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 7.4e-06 56.6 113 27.4


User provided reference genes

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