Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 7.5e-184 647.1 343 100.0
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.3e-95 354.0 362 55.0
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 5.9e-88 328.6 350 52.9
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 3.8e-87 325.9 383 51.2
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.4e-86 323.9 316 52.8
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 2.1e-85 320.1 337 55.2
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 4.7e-85 318.9 388 49.7
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 4.4e-83 312.4 322 53.7
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.3e-79 300.8 315 49.5
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 1.0e-71 274.6 326 46.6
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 2.2e-71 273.5 331 47.7
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 1.1e-70 271.2 303 50.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 9.4e-70 268.1 264 51.9
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 2.1e-69 266.9 302 49.0
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.4e-68 264.2 331 47.1
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 5.2e-68 262.3 189 65.6
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 9.8e-67 258.1 290 51.0
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 2.2e-66 256.9 277 48.4
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 2.2e-66 256.9 309 47.2
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 2.2e-66 256.9 334 45.5
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 4.8e-66 255.8 325 45.2
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.3e-63 247.7 305 47.2
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 2.8e-61 240.0 314 45.9
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 3.4e-59 233.0 248 56.0
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 7.5e-59 231.9 301 42.5
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.3e-58 231.1 226 53.5
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.7e-58 230.7 318 42.8
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 3.7e-58 229.6 312 44.9
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.1e-57 228.0 244 50.8
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 7.0e-57 225.3 311 42.8
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.2e-56 224.6 386 37.3
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.7e-56 223.4 314 40.8
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 4.5e-56 222.6 290 45.9
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 2.9e-55 219.9 308 40.9
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 5.0e-55 219.2 311 41.5
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 5.0e-55 219.2 311 41.5
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 8.6e-55 218.4 302 44.7
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.5e-54 217.6 249 48.2
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.5e-54 217.6 283 43.8
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.6e-53 214.2 307 40.1
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 2.8e-53 213.4 312 39.7
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 4.7e-53 212.6 327 39.4
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 4.0e-52 209.5 310 42.6
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 5.2e-52 209.1 223 52.0
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 5.2e-52 209.1 315 40.0
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.2e-51 208.0 335 39.7
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 9.8e-51 204.9 249 47.0
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.2e-45 188.0 213 46.5
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 4.7e-45 186.0 255 39.6
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 7.5e-43 178.7 302 39.4
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.7e-40 170.2 318 40.3
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 3.5e-40 169.9 305 39.3
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.1e-38 164.9 311 38.6
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 1.8e-36 157.5 306 35.9
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 1.3e-34 151.4 241 37.8
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 2.2e-34 150.6 306 34.6
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.1e-33 148.3 365 31.5
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 7.3e-30 135.6 177 42.4
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 6.2e-29 132.5 227 34.8
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 5.8e-27 125.9 228 35.5
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 9.9e-27 125.2 112 48.2
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 3.0e-23 113.6 288 29.9
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.9e-22 110.9 156 35.3
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.5e-22 110.5 156 35.3
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 5.6e-22 109.4 81 60.5
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 5.6e-22 109.4 81 60.5
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.6e-22 109.4 156 34.6
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.6e-21 107.8 156 36.5
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 2.1e-21 107.5 153 35.9
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.1e-20 105.1 137 40.9
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 2.4e-20 104.0 155 35.5
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 4.0e-20 103.2 150 34.0
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 6.9e-20 102.4 159 35.2
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.5e-19 101.3 152 34.2
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 2.0e-19 100.9 173 37.6
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 2.6e-19 100.5 152 34.2
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 2.6e-19 100.5 152 34.2
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 2.6e-19 100.5 152 34.2
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.4e-19 100.1 155 35.5
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.4e-19 99.8 155 37.4
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 9.9e-19 98.6 156 35.3
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 7.1e-17 92.4 155 32.9
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 3.5e-16 90.1 160 35.0
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 4.6e-16 89.7 162 32.1
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 1.0e-15 88.6 191 32.5
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.3e-15 88.2 157 34.4
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 1.3e-15 88.2 175 33.7
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 2.3e-15 87.4 150 31.3
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 3.0e-15 87.0 150 31.3
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 3.9e-15 86.7 149 34.2
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.1e-14 85.1 191 32.5
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 1.5e-14 84.7 214 27.6
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 1.9e-14 84.3 151 33.8
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 1.9e-14 84.3 151 33.8
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 2.5e-14 84.0 182 30.2
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 4.3e-14 83.2 150 28.7
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 5.6e-14 82.8 175 32.6
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 7.3e-14 82.4 179 33.0
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 1.6e-13 81.3 148 35.8
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 2.8e-13 80.5 90 38.9
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 4.8e-13 79.7 147 34.0
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 8.1e-13 79.0 160 29.4
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 8.1e-13 79.0 137 31.4
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.1e-12 78.6 156 31.4
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 1.1e-12 78.6 157 31.8
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 2.4e-12 77.4 150 32.7
CSS0002164 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 4.0e-12 76.6 78 47.4
CSS0011273 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 4.0e-12 76.6 78 47.4
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 4.0e-12 76.6 164 28.7
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 2.0e-11 74.3 187 29.4
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 3.4e-11 73.6 211 29.9
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.7e-10 71.2 64 45.3
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.9e-10 70.5 181 24.9
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 6.4e-10 69.3 141 29.8
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 1.4e-09 68.2 169 27.8
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 2.4e-09 67.4 148 29.1
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 7.1e-09 65.9 184 30.4
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 7.1e-09 65.9 88 33.0
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 9.3e-09 65.5 61 45.9
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 1.2e-08 65.1 167 33.5
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.6e-08 64.7 53 50.9
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.1e-08 64.3 148 28.4
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 2.1e-08 64.3 163 24.5
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 3.5e-08 63.5 117 29.9
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.5e-08 63.5 163 24.5
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 4.6e-08 63.2 53 49.1
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 6.0e-08 62.8 58 51.7
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 7.9e-08 62.4 49 53.1
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 7.9e-08 62.4 115 40.0
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 7.9e-08 62.4 122 34.4
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 1.8e-07 61.2 204 27.9
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 1.8e-07 61.2 96 37.5
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 2.3e-07 60.8 118 32.2
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 2.3e-07 60.8 94 39.4
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 3.0e-07 60.5 187 28.9
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 3.9e-07 60.1 259 24.7
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 3.9e-07 60.1 187 28.9
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 5.1e-07 59.7 107 31.8
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 8.7e-07 58.9 116 31.9
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 8.7e-07 58.9 92 38.0
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 8.7e-07 58.9 152 29.6
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.1e-06 58.5 210 26.2
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 1.1e-06 58.5 205 28.3
HPP92_005917 Vanilla planifolia HOM05D002182 ORTHO05D004671 1.1e-06 58.5 200 28.5
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 1.5e-06 58.2 103 35.0
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 1.5e-06 58.2 71 36.6
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 1.9e-06 57.8 205 29.3
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 1.9e-06 57.8 203 28.6
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 1.9e-06 57.8 126 34.9
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.5e-06 57.4 45 55.6
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 3.3e-06 57.0 92 35.9
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 3.3e-06 57.0 46 50.0
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 3.3e-06 57.0 46 50.0
MBI07_g43314_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 3.3e-06 57.0 130 33.1
Nitab4.5_0001277g0010 Nicotiana tabacum HOM05D002182 ORTHO05D004671 3.3e-06 57.0 118 32.2
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 4.3e-06 56.6 203 29.6
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 4.3e-06 56.6 103 34.0
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 4.3e-06 56.6 60 41.7
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 4.3e-06 56.6 101 33.7
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 5.6e-06 56.2 96 34.4
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 5.6e-06 56.2 48 52.1
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 5.6e-06 56.2 159 27.0
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 5.6e-06 56.2 99 35.4
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 7.4e-06 55.8 103 34.0
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 7.4e-06 55.8 159 28.3
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 9.6e-06 55.5 99 34.3
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 9.6e-06 55.5 86 31.4
Solyc05g014720.4 Solanum lycopersicum HOM05D002182 ORTHO05D004671 9.6e-06 55.5 101 32.7


User provided reference genes

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