Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 2.8e-110 402.1 229 100.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.1e-95 353.6 230 86.5
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 4.3e-95 351.7 230 85.2
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.4e-95 350.9 231 85.3
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.4e-95 350.9 231 85.3
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 2.8e-94 349.0 229 83.4
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 3.7e-94 348.6 230 84.8
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.8e-93 346.3 246 78.9
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.2e-92 343.6 231 85.3
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.5e-92 343.2 230 86.1
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.5e-92 343.2 229 83.0
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.6e-92 342.4 235 83.8
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 4.5e-92 341.7 229 82.1
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 5.9e-92 341.3 231 86.1
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 7.7e-92 340.9 229 86.0
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.3e-91 340.1 231 84.4
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.7e-91 339.7 233 83.3
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 3.8e-91 338.6 229 81.7
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 8.5e-91 337.4 230 83.9
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.4e-90 336.7 229 81.2
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 2.5e-90 335.9 231 83.5
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 2.5e-90 335.9 230 81.7
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 2.5e-90 335.9 230 83.0
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 3.2e-90 335.5 231 82.7
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 4.2e-90 335.1 230 83.5
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 4.2e-90 335.1 230 81.7
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 4.2e-90 335.1 231 84.0
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 5.5e-90 334.7 230 83.0
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.6e-89 333.2 230 83.5
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 2.1e-89 332.8 230 82.2
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 2.1e-89 332.8 232 82.8
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.1e-89 332.8 231 83.1
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.7e-89 332.4 230 82.6
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 3.6e-89 332.0 232 82.3
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 4.6e-89 331.6 231 82.3
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 4.6e-89 331.6 229 79.5
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 6.1e-89 331.3 229 81.7
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 7.9e-89 330.9 231 81.8
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 1.0e-88 330.5 231 82.7
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.8e-88 329.7 232 81.5
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.8e-88 329.7 232 82.3
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.8e-88 329.7 232 81.5
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.8e-88 329.7 230 80.9
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 2.3e-88 329.3 231 81.8
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 3.0e-88 328.9 232 81.5
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 3.0e-88 328.9 233 82.4
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 3.0e-88 328.9 233 82.4
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.9e-88 328.6 233 82.0
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 3.9e-88 328.6 231 78.8
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 5.1e-88 328.2 231 81.8
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 8.8e-88 327.4 232 82.3
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 8.8e-88 327.4 232 82.3
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 8.8e-88 327.4 229 80.3
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.1e-87 327.0 234 84.2
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.1e-87 327.0 231 83.1
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.5e-87 326.6 229 80.3
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 2.0e-87 326.2 231 81.0
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.0e-87 326.2 234 83.3
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.5e-87 325.9 232 81.0
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 4.3e-87 325.1 232 81.9
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 4.3e-87 325.1 229 78.6
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 5.7e-87 324.7 232 82.8
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 7.4e-87 324.3 231 82.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 9.7e-87 323.9 232 81.5
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 9.7e-87 323.9 232 81.5
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 9.7e-87 323.9 232 81.5
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.3e-86 323.6 233 82.8
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.3e-86 323.6 233 82.8
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 1.3e-86 323.6 230 80.0
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.7e-86 323.2 232 82.8
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.7e-86 323.2 231 81.0
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 2.2e-86 322.8 243 78.6
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 2.2e-86 322.8 229 80.8
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 2.2e-86 322.8 232 78.9
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.8e-86 322.4 229 79.9
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 3.7e-86 322.0 234 82.1
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 4.8e-86 321.6 230 80.4
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.8e-86 321.6 235 80.9
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.4e-85 320.1 229 80.3
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 6.9e-85 317.8 232 78.4
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 6.9e-85 317.8 232 78.4
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 9.1e-85 317.4 231 77.5
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 1.0e-83 313.9 230 78.7
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 1.0e-83 313.9 229 80.3
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.3e-83 313.5 229 73.8
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 2.2e-83 312.8 233 77.7
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 2.2e-83 312.8 233 80.3
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 2.2e-83 312.8 234 80.3
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.9e-83 312.4 234 76.5
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 3.8e-83 312.0 229 80.3
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 5.0e-83 311.6 230 77.8
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 5.0e-83 311.6 229 73.4
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 2.5e-82 309.3 232 77.6
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.5e-82 309.3 230 80.9
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 3.2e-82 308.9 230 77.8
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 9.4e-82 307.4 229 76.9
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.6e-81 306.6 231 78.4
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 2.7e-81 305.8 251 69.7
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.0e-80 303.9 229 76.9
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.8e-80 303.1 231 78.8
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.8e-80 303.1 237 78.5
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.3e-80 302.8 284 62.0
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.0e-79 299.7 229 71.6
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 5.7e-79 298.1 238 71.8
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 8.2e-78 294.3 230 74.8
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 8.2e-78 294.3 230 74.8
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 8.2e-78 294.3 232 70.7
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 8.2e-78 294.3 231 76.2
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.4e-77 293.5 232 75.9
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.1e-77 292.0 217 83.4
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.0e-77 291.2 232 70.7
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 9.1e-77 290.8 233 75.1
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.5e-76 290.0 233 75.5
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 2.0e-76 289.7 229 69.4
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 2.9e-75 285.8 225 74.2
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 6.5e-75 284.6 234 72.2
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 6.5e-75 284.6 234 72.2
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 1.1e-74 283.9 232 75.9
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.9e-74 283.1 229 67.2
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 4.2e-74 282.0 232 73.7
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 7.2e-74 281.2 229 70.3
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 9.4e-74 280.8 229 70.3
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 2.7e-73 279.3 233 70.0
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.1e-73 278.1 229 73.8
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-72 276.6 229 73.4
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.9e-72 275.4 229 73.4
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 5.2e-72 275.0 231 71.4
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.0e-71 273.1 229 72.9
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 2.6e-71 272.7 232 69.8
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.8e-69 266.5 229 69.4
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 4.1e-69 265.4 229 70.7
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 9.1e-69 264.2 229 70.3
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.2e-68 263.8 229 71.6
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.2e-68 263.8 271 61.3
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.0e-67 260.8 232 69.0
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 2.5e-66 256.1 231 69.7
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.5e-63 246.9 233 67.8
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 4.1e-61 238.8 188 76.6
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 4.7e-57 225.3 186 75.3
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 5.7e-55 218.4 238 63.9
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.3e-54 214.9 187 73.3
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.1e-53 212.6 231 62.3
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.7e-52 209.5 155 78.7
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.2e-50 201.4 252 50.0
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 6.1e-49 198.4 154 76.6
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 8.9e-48 194.5 234 58.5
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.4e-47 192.6 115 85.2
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 1.3e-46 190.7 115 83.5
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 2.4e-45 186.4 241 54.4
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.7e-44 183.0 115 80.0
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.6e-43 178.3 113 79.6
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-42 177.6 113 79.6
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.5e-42 177.2 150 76.7
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-41 173.7 113 77.9
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.5e-39 164.9 97 86.6
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 2.2e-38 163.3 93 89.2
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 7.0e-37 158.3 116 76.7
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.2e-36 157.5 98 82.7
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 2.3e-32 143.3 176 55.7
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 6.8e-32 141.7 76 89.5
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.3e-30 137.5 81 82.7
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 3.2e-29 132.9 91 76.9
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 1.9e-26 123.6 179 54.7
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 3.3e-26 122.9 98 71.4
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 1.2e-25 120.9 229 41.0
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-24 117.1 184 44.6
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 3.1e-24 116.3 101 66.3
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 5.2e-24 115.5 78 74.4
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 7.1e-21 105.1 226 37.2
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.4e-16 90.9 68 76.5
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.2e-14 83.6 44 88.6
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 2.9e-14 83.2 71 62.0
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 1.4e-13 80.9 56 73.2
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.2e-12 77.8 87 49.4
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.0e-08 62.8 84 51.2
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.6e-07 60.1 87 47.1


User provided reference genes

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