Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2795 Cannabis sativa HOM05D001392 ORTHO05D014305 2.4e-51 205.3 110 100.0
CANSAT56G1922 Cannabis sativa HOM05D001392 ORTHO05D003370 8.3e-44 180.3 102 97.1
Dinv36391 Davidia involucrata HOM05D001392 ORTHO05D003370 1.9e-24 115.9 99 63.6
Actinidia34075 Actinidia chinensis HOM05D001392 ORTHO05D003370 2.1e-23 112.5 99 59.6
Actinidia34544 Actinidia chinensis HOM05D001392 ORTHO05D003370 2.1e-23 112.5 99 59.6
CiPaw.04G068200 Carya illinoinensis HOM05D001392 ORTHO05D003370 2.8e-23 112.1 99 61.6
Cc06_g03770 Coffea canephora HOM05D001392 ORTHO05D003370 6.2e-23 110.9 99 61.6
vmacro06729 Vaccinium macrocarpon HOM05D001392 ORTHO05D014305 8.1e-23 110.5 99 60.6
Cfa008272 Carpinus fangiana HOM05D001392 ORTHO05D003370 1.8e-22 109.4 99 59.6
GSVIVG01010632001 Vitis vinifera HOM05D001392 ORTHO05D003370 1.8e-22 109.4 99 60.6
TAR375G1057 Trochodendron aralioides HOM05D001392 ORTHO05D003370 5.2e-22 107.8 99 60.6
QL09p015520 Quercus lobata HOM05D001392 ORTHO05D003370 1.2e-21 106.7 99 59.6
CSS0006913 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D003370 1.5e-21 106.3 99 56.6
CSS0026523 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D003370 1.5e-21 106.3 99 56.6
CSS0030571 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D003370 1.5e-21 106.3 99 56.6
Sc07g0001630 Simmondsia chinensis HOM05D001392 ORTHO05D003370 1.5e-21 106.3 99 57.6
CsaV3_5G005900 Cucumis sativus L. HOM05D001392 ORTHO05D003370 4.4e-21 104.8 99 59.6
Lj9C302G3 Lonicera japonica HOM05D001392 ORTHO05D003370 5.8e-21 104.4 99 54.5
Dinv31233 Davidia involucrata HOM05D001392 ORTHO05D003370 7.6e-21 104.0 99 57.6
RcHm_v2.0_Chr1g0376611 Rosa chinensis HOM05D001392 ORTHO05D003370 7.6e-21 104.0 99 58.6
MBI18_g01867_MAGBIO Magnolia biondii HOM05D001392 ORTHO05D003370 1.3e-20 103.2 91 58.2
Sed0018333 Sechium edule HOM05D001392 ORTHO05D003370 1.3e-20 103.2 99 57.6
Ah.03g134560 Amaranthus hybridus HOM05D001392 ORTHO05D003370 1.7e-20 102.8 99 55.6
MELO3C005366.2 Cucumis melo HOM05D001392 ORTHO05D003370 2.2e-20 102.4 99 56.6
Prupe.2G289400 Prunus persica HOM05D001392 ORTHO05D003370 2.9e-20 102.1 99 58.6
Eucgr.F04425 Eucalyptus grandis HOM05D001392 ORTHO05D003370 3.8e-20 101.7 89 61.8
MD07G1262800 Malus domestica HOM05D001392 ORTHO05D003370 3.8e-20 101.7 99 56.6
MD01G1196000 Malus domestica HOM05D001392 ORTHO05D003370 4.9e-20 101.3 99 56.6
Cpa.g.sc2.74 Carica papaya HOM05D001392 ORTHO05D003370 6.4e-20 100.9 86 61.6
FvH4_7g28940 Fragaria vesca HOM05D001392 ORTHO05D003370 6.4e-20 100.9 99 57.6
FAN06G3456 Fragaria x ananassa HOM05D001392 ORTHO05D003370 6.4e-20 100.9 99 57.6
CDE08G1587 Ceratophyllum demersum HOM05D001392 ORTHO05D003370 1.1e-19 100.1 94 56.4
EL10Ac8g19565 Beta vulgaris HOM05D001392 ORTHO05D003370 1.9e-19 99.4 99 54.5
FAN03G1076 Fragaria x ananassa HOM05D001392 ORTHO05D003370 1.9e-19 99.4 99 56.6
FAN03G1857 Fragaria x ananassa HOM05D001392 ORTHO05D003370 1.9e-19 99.4 99 56.6
FAN10G1869 Fragaria x ananassa HOM05D001392 ORTHO05D003370 1.9e-19 99.4 99 56.6
Haze_13765 Corylus avellana HOM05D001392 ORTHO05D014305 3.2e-19 98.6 94 58.5
FAN06G3412 Fragaria x ananassa HOM05D001392 ORTHO05D003370 3.2e-19 98.6 99 56.6
Oeu006731.1 Olea europaea HOM05D001392 ORTHO05D014305 3.2e-19 98.6 97 55.7
Hund20713 Selenicereus undatus HOM05D001392 ORTHO05D003370 7.1e-19 97.4 87 60.9
Thecc.09G180600 Theobroma cacao HOM05D001392 ORTHO05D003370 4.6e-18 94.7 97 54.6
COL.COLO4_31125 Corchorus olitorius HOM05D001392 ORTHO05D003370 6.0e-18 94.4 97 54.6
unitig_744.g24676 Utricularia gibba HOM05D001392 ORTHO05D003370 6.0e-18 94.4 99 51.5
Lsat_1_v5_gn_5_61861 Lactuca sativa HOM05D001392 ORTHO05D003370 1.0e-17 93.6 97 52.6
ATR0782G056 Amborella trichopoda HOM05D001392 ORTHO05D003370 1.3e-17 93.2 101 49.5
AUR62002803 Chenopodium quinoa HOM05D001392 ORTHO05D003370 3.0e-17 92.0 100 52.0
Potri.007G004100 Populus trichocarpa HOM05D001392 ORTHO05D003370 3.0e-17 92.0 97 52.6
AUR62014110 Chenopodium quinoa HOM05D001392 ORTHO05D003370 3.9e-17 91.7 100 52.0
Duzib170G0790 Durio zibethinus HOM05D001392 ORTHO05D003370 3.9e-17 91.7 97 52.6
Gohir.A08G018000 Gossypium hirsutum HOM05D001392 ORTHO05D003370 3.9e-17 91.7 100 51.0
HanXRQChr14g0461381 Helianthus annuus HOM05D001392 ORTHO05D003370 3.9e-17 91.7 99 51.5
MSTRG.26714 Avicennia marina HOM05D001392 ORTHO05D003370 5.1e-17 91.3 99 53.5
Gohir.D08G028600 Gossypium hirsutum HOM05D001392 ORTHO05D003370 5.1e-17 91.3 100 51.0
Gorai.004G025700 Gossypium raimondii HOM05D001392 ORTHO05D003370 5.1e-17 91.3 100 51.0
Oeu006734.3 Olea europaea HOM05D001392 ORTHO05D003370 5.1e-17 91.3 90 55.6
COL.COLO4_25471 Corchorus olitorius HOM05D001392 ORTHO05D003370 6.6e-17 90.9 97 52.6
Lsat_1_v5_gn_7_60741 Lactuca sativa HOM05D001392 ORTHO05D003370 6.6e-17 90.9 97 50.5
DCAR_020225 Daucus carota HOM05D001392 ORTHO05D003370 8.7e-17 90.5 98 49.0
ECA240G2105 Erigeron canadensis HOM05D001392 ORTHO05D003370 1.5e-16 89.7 97 52.6
Lsat_1_v5_gn_7_60720 Lactuca sativa HOM05D001392 ORTHO05D003370 2.5e-16 89.0 97 49.5
ClCG01G005680 Citrullus lanatus HOM05D001392 ORTHO05D003370 3.3e-16 88.6 99 52.5
BraA08t35113Z Brassica rapa HOM05D001392 ORTHO05D003370 5.6e-16 87.8 93 52.7
Eucgr.E01106 Eucalyptus grandis HOM05D001392 ORTHO05D003370 5.6e-16 87.8 99 51.5
HanXRQChr03g0071441 Helianthus annuus HOM05D001392 ORTHO05D003370 5.6e-16 87.8 99 49.5
BcaC07g38749 Brassica carinata HOM05D001392 ORTHO05D003370 7.3e-16 87.4 81 59.3
BcaNung05660 Brassica carinata HOM05D001392 ORTHO05D003370 7.3e-16 87.4 81 59.3
C08p16790 Brassica napus HOM05D001392 ORTHO05D003370 9.6e-16 87.0 81 59.3
BolC8t49300H Brassica oleracea HOM05D001392 ORTHO05D003370 9.6e-16 87.0 81 59.3
Migut.J00558 Erythranthe guttata HOM05D001392 ORTHO05D003370 9.6e-16 87.0 99 51.5
BcaC05g25377 Brassica carinata HOM05D001392 ORTHO05D003370 1.2e-15 86.7 80 57.5
BcaC07g41556 Brassica carinata HOM05D001392 ORTHO05D003370 1.2e-15 86.7 80 57.5
A06p10670 Brassica napus HOM05D001392 ORTHO05D003370 1.2e-15 86.7 80 57.5
A09p61990 Brassica napus HOM05D001392 ORTHO05D003370 1.2e-15 86.7 80 57.5
C08p45570 Brassica napus HOM05D001392 ORTHO05D003370 1.2e-15 86.7 80 57.5
BolC8t52110H Brassica oleracea HOM05D001392 ORTHO05D003370 1.2e-15 86.7 80 57.5
BraA06t24247Z Brassica rapa HOM05D001392 ORTHO05D003370 1.2e-15 86.7 80 57.5
BraA09t41562Z Brassica rapa HOM05D001392 ORTHO05D003370 1.2e-15 86.7 80 57.5
Potri.005G087850 Populus trichocarpa HOM05D001392 ORTHO05D003370 1.2e-15 86.7 97 49.5
Sp1g12970 Schrenkiella parvula HOM05D001392 ORTHO05D003370 1.2e-15 86.7 80 57.5
AUR62014114 Chenopodium quinoa HOM05D001392 ORTHO05D003370 1.6e-15 86.3 100 49.0
BcaB02g06531 Brassica carinata HOM05D001392 ORTHO05D003370 2.8e-15 85.5 80 56.2
C05p12580 Brassica napus HOM05D001392 ORTHO05D003370 2.8e-15 85.5 80 56.2
BolC5t30002H Brassica oleracea HOM05D001392 ORTHO05D003370 2.8e-15 85.5 80 56.2
BolC3t19544H Brassica oleracea HOM05D001392 ORTHO05D003370 3.6e-15 85.1 83 55.4
THA.LOC104824111 Tarenaya hassleriana HOM05D001392 ORTHO05D003370 3.6e-15 85.1 83 56.6
Zm00001eb104290 Zea mays HOM05D001392 ORTHO05D003370 3.6e-15 85.1 98 43.9
PGR031G3606 Punica granatum HOM05D001392 ORTHO05D003370 4.7e-15 84.7 97 50.5
Os10g0506200 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D003370 8.1e-15 84.0 99 43.4
SEGI_04262 Sequoiadendron giganteum HOM05D001392 ORTHO05D003370 8.1e-15 84.0 99 47.5
Thhalv10006628m.g Eutrema salsugineum HOM05D001392 ORTHO05D003370 1.1e-14 83.6 80 55.0
SGA_v2.0_scaffold35G14149 Striga asiatica HOM05D001392 ORTHO05D003370 1.1e-14 83.6 99 48.5
A08p31910 Brassica napus HOM05D001392 ORTHO05D003370 1.4e-14 83.2 80 57.5
THA.LOC104805109 Tarenaya hassleriana HOM05D001392 ORTHO05D003370 1.4e-14 83.2 81 55.6
Zm00001eb415220 Zea mays HOM05D001392 ORTHO05D003370 1.8e-14 82.8 98 42.9
EL10Ac5g11700 Beta vulgaris HOM05D001392 ORTHO05D003370 2.4e-14 82.4 137 40.1
BcaB03g13091 Brassica carinata HOM05D001392 ORTHO05D003370 5.2e-14 81.3 80 56.2
Mapoly0132s0012 Marchantia polymorpha HOM05D001392 ORTHO05D003370 5.2e-14 81.3 99 43.4
Os03g0694900 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D003370 6.9e-14 80.9 98 43.9
Carub.0001s1437 Capsella rubella HOM05D001392 ORTHO05D003370 1.5e-13 79.7 89 50.6
Haze_10572 Corylus avellana HOM05D001392 ORTHO05D014305 2.6e-13 79.0 72 58.3
AT1G14610 Arabidopsis thaliana HOM05D001392 ORTHO05D003370 3.4e-13 78.6 80 53.8
CARHR015110 Cardamine hirsuta HOM05D001392 ORTHO05D003370 3.4e-13 78.6 80 51.2
AL1G26580 Arabidopsis lyrata HOM05D001392 ORTHO05D003370 7.6e-13 77.4 80 53.8
PSO782G2668 Papaver somniferum HOM05D001392 ORTHO05D003370 9.9e-13 77.0 100 45.0
BcaC06g34238 Brassica carinata HOM05D001392 ORTHO05D032327 1.3e-12 76.6 93 47.3
Phvul.007G066400 Phaseolus vulgaris HOM05D001392 ORTHO05D003370 1.3e-12 76.6 86 53.5
C04p41180 Brassica napus HOM05D003550 ORTHO05D032327 2.2e-12 75.9 93 49.5
BolC4t25700H Brassica oleracea HOM05D003550 ORTHO05D032327 2.2e-12 75.9 93 49.5
Peaxi162Scf00254g00012 Petunia axillaris HOM05D001392 ORTHO05D003370 2.2e-12 75.9 91 49.5
VMungo0720G1540 Vigna mungo HOM05D001392 ORTHO05D003370 2.2e-12 75.9 86 52.3
PSO478G1977 Papaver somniferum HOM05D001392 ORTHO05D003370 2.9e-12 75.5 100 44.0
Aa31LG1G460 Aethionema arabicum HOM05D001392 ORTHO05D003370 3.8e-12 75.1 91 46.2
Aqoxy7G00465 Aquilegia oxysepala HOM05D001392 ORTHO05D003370 3.8e-12 75.1 101 43.6
Glyma.10G239500 Glycine max HOM05D001392 ORTHO05D003370 4.9e-12 74.7 85 52.9
Carub.0001s3391 Capsella rubella HOM05D001392 ORTHO05D003370 6.4e-12 74.3 89 48.3
Manes.09G005800 Manihot esculenta HOM05D001392 ORTHO05D003370 6.4e-12 74.3 100 43.0
HPP92_001074 Vanilla planifolia HOM05D001392 ORTHO05D003370 6.4e-12 74.3 100 44.0
arahy.Tifrunner.gnm1.ann1.R98RGQ Arachis hypogaea HOM05D001392 ORTHO05D003370 8.4e-12 73.9 101 47.5
A08p27330 Brassica napus HOM05D001392 ORTHO05D003370 8.4e-12 73.9 83 51.8
BraA08t34676Z Brassica rapa HOM05D001392 ORTHO05D003370 8.4e-12 73.9 83 51.8
SGA_v2.0_scaffold452G51847 Striga asiatica HOM05D001392 ORTHO05D014305 1.1e-11 73.6 79 50.6
CAN.G1091.5 Capsicum annuum HOM05D001392 ORTHO05D003370 1.4e-11 73.2 91 47.3
Zm00001eb345100 Zea mays HOM05D000325 ORTHO05D014305 1.4e-11 73.2 87 48.3
Aqoxy2G03097 Aquilegia oxysepala HOM05D001392 ORTHO05D003370 1.9e-11 72.8 101 42.6
arahy.Tifrunner.gnm1.ann1.K04UQ8 Arachis hypogaea HOM05D001392 ORTHO05D003370 1.9e-11 72.8 101 47.5
TWI15G0272 Tripterygium wilfordii HOM05D001392 ORTHO05D003370 1.9e-11 72.8 92 41.3
RcHm_v2.0_Chr7g0218411 Rosa chinensis HOM05D001392 ORTHO05D003370 2.4e-11 72.4 90 48.9
Lalb_Chr12g0210011 Lupinus albus HOM05D001392 ORTHO05D003370 5.4e-11 71.2 86 50.0
TWI81G0741 Tripterygium wilfordii HOM05D001392 ORTHO05D003370 5.4e-11 71.2 92 41.3
Peaxi162Scf00079g00089 Petunia axillaris HOM05D001392 ORTHO05D003370 9.3e-11 70.5 99 45.5
BcaC06g35086 Brassica carinata HOM05D001392 ORTHO05D003370 1.2e-10 70.1 84 53.6
C07p20010 Brassica napus HOM05D001392 ORTHO05D003370 1.2e-10 70.1 84 53.6
BolC7t42520H Brassica oleracea HOM05D001392 ORTHO05D003370 1.2e-10 70.1 84 53.6
Psat6g201440 Pisum sativum HOM05D001392 ORTHO05D003370 1.2e-10 70.1 86 51.2
Peaxi162Scf00182g00085 Petunia axillaris HOM05D001392 ORTHO05D003370 1.6e-10 69.7 90 44.4
Solyc09g007540.3 Solanum lycopersicum HOM05D001392 ORTHO05D003370 1.6e-10 69.7 91 48.4
Sopen09g002410 Solanum pennellii HOM05D001392 ORTHO05D003370 1.6e-10 69.7 91 48.4
Ca_10801_v3 Cicer arietinum L. HOM05D001392 ORTHO05D003370 2.1e-10 69.3 86 48.8
Nitab4.5_0000669g0060 Nicotiana tabacum HOM05D001392 ORTHO05D003370 2.7e-10 68.9 100 43.0
Sabra07G0003000 Salix brachista HOM05D001392 ORTHO05D003370 2.7e-10 68.9 138 36.2
A07p13390 Brassica napus HOM05D001392 ORTHO05D003370 6.0e-10 67.8 84 51.2
CARHR024700 Cardamine hirsuta HOM05D001392 ORTHO05D003370 6.0e-10 67.8 96 49.0
CARHR260940 Cardamine hirsuta HOM05D001392 ORTHO05D003370 6.0e-10 67.8 76 48.7
Nitab4.5_0008025g0020 Nicotiana tabacum HOM05D001392 ORTHO05D003370 1.0e-09 67.0 100 41.0
MCO07G752 Micromonas commoda HOM05D001392 ORTHO05D003370 1.7e-09 66.2 100 39.0
TPR.G34728 Trifolium pratense HOM05D001392 ORTHO05D003370 1.7e-09 66.2 81 48.1
Hund20715 Selenicereus undatus HOM05D001392 ORTHO05D003370 2.3e-09 65.9 51 62.7
SHI28861 Sapria himalayana HOM05D001392 ORTHO05D003370 3.0e-09 65.5 104 38.5
Oeu022370.1 Olea europaea HOM05D001392 ORTHO05D003370 3.9e-09 65.1 99 42.4
LjContig00238g0000416 Lotus japonicus HOM05D001392 ORTHO05D003370 6.6e-09 64.3 97 44.3
CBR_g31285 Chara braunii HOM05D001392 ORTHO05D003370 1.5e-08 63.2 84 42.9
Thhalv10006653m.g Eutrema salsugineum HOM05D001392 ORTHO05D003370 1.9e-08 62.8 84 50.0
Pp3c2_9830 Physcomitrium patens HOM05D001392 ORTHO05D003370 1.9e-08 62.8 100 35.0
Ciclev10004208m.g Citrus clementina HOM05D001392 ORTHO05D003370 3.3e-08 62.0 85 47.1
Medtr1g101620 Medicago truncatula HOM05D001392 ORTHO05D003370 3.3e-08 62.0 85 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3387 Anthoceros agrestis HOM05D001392 ORTHO05D003370 5.6e-08 61.2 99 36.4
AagrBONN_evm.TU.Sc2ySwM_228.4580 Anthoceros agrestis HOM05D001392 ORTHO05D003370 7.3e-08 60.8 99 36.4
TPR.G17429 Trifolium pratense HOM05D001392 ORTHO05D003370 3.6e-07 58.5 93 41.9
MD17G1256800 Malus domestica HOM05D001392 ORTHO05D003370 1.8e-06 56.2 96 38.5
MD15G1433500 Malus domestica HOM05D001392 ORTHO05D003370 3.1e-06 55.5 96 38.5


User provided reference genes

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