Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-164 582.0 294 100.0
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 3.2e-143 511.9 294 86.4
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 9.4e-143 510.4 294 86.1
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 6.1e-142 507.7 294 85.4
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 8.8e-141 503.8 294 85.0
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.1e-140 503.4 294 85.7
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 1.5e-140 503.1 294 85.4
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 7.4e-140 500.7 294 84.4
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.7e-139 498.4 296 85.8
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 2.4e-138 495.7 295 84.7
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.4e-138 495.7 294 84.0
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 3.4e-137 491.9 294 85.7
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 3.4e-137 491.9 294 83.3
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 4.5e-137 491.5 292 83.9
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 4.5e-137 491.5 294 85.0
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.8e-136 488.4 294 84.4
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 3.8e-136 488.4 292 83.6
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 6.5e-136 487.6 294 83.0
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 5.5e-135 484.6 294 81.6
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.6e-134 483.0 292 82.9
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 2.7e-134 482.3 294 81.0
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 4.7e-134 481.5 294 82.0
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 6.1e-134 481.1 294 81.0
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 6.1e-134 481.1 294 81.6
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 6.1e-134 481.1 292 80.1
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.0e-133 480.3 294 80.6
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.8e-133 479.6 292 80.8
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 2.3e-133 479.2 292 79.8
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 5.1e-133 478.0 292 82.2
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 4.4e-132 474.9 294 82.7
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 5.7e-132 474.6 292 79.5
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 5.7e-132 474.6 328 75.0
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 1.3e-131 473.4 294 79.6
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.7e-131 473.0 325 75.4
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 6.3e-131 471.1 292 79.8
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.4e-130 469.9 294 81.0
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.4e-130 469.9 293 81.2
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.8e-130 469.5 282 81.6
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.8e-130 469.5 294 79.6
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.8e-130 469.5 294 79.6
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.8e-130 469.5 295 79.7
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 5.3e-130 468.0 293 80.5
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 9.1e-130 467.2 308 77.6
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.6e-129 466.5 294 79.3
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 2.6e-129 465.7 294 79.6
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 3.5e-129 465.3 275 83.6
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 4.5e-129 464.9 323 74.3
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 2.2e-128 462.6 294 78.6
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 3.8e-128 461.8 294 78.6
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 5.0e-128 461.5 294 78.6
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 6.5e-128 461.1 294 78.6
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.1e-127 460.3 294 78.6
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 1.9e-127 459.5 293 79.2
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 3.2e-127 458.8 294 79.6
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 3.2e-127 458.8 298 77.9
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 7.2e-127 457.6 294 79.6
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.2e-126 456.8 294 77.9
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 2.7e-126 455.7 294 79.3
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 1.4e-125 453.4 294 75.5
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.8e-125 453.0 292 75.3
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 2.3e-125 452.6 296 77.4
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.3e-125 452.6 294 76.5
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 2.3e-125 452.6 294 79.3
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 5.2e-125 451.4 294 79.6
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 5.2e-125 451.4 294 79.6
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.1e-124 450.3 292 77.4
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.5e-124 449.9 294 79.3
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.6e-124 449.1 294 77.2
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.3e-124 448.7 294 76.2
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 5.7e-124 448.0 294 78.2
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.7e-123 446.4 292 76.7
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 3.7e-123 445.3 298 76.8
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 6.3e-123 444.5 295 76.3
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 8.2e-123 444.1 294 76.9
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.1e-122 443.7 294 76.5
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 2.4e-122 442.6 294 77.9
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.4e-122 442.6 292 76.0
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 2.4e-122 442.6 270 81.5
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 4.1e-122 441.8 294 76.2
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.6e-121 439.9 330 70.9
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 4.5e-121 438.3 294 76.9
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.3e-120 436.8 310 72.3
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.2e-120 436.0 312 72.1
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 2.2e-120 436.0 293 73.4
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 3.8e-120 435.3 294 76.2
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 3.8e-120 435.3 294 76.2
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 3.8e-120 435.3 294 73.5
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 5.0e-120 434.9 293 75.1
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 8.5e-120 434.1 294 73.1
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.4e-117 426.8 296 74.7
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 6.8e-117 424.5 286 75.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.0e-116 422.9 294 73.8
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.0e-116 422.9 386 61.4
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.3e-115 420.2 292 74.7
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 2.8e-115 419.1 238 87.4
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 8.3e-115 417.5 294 72.8
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 8.3e-115 417.5 292 74.0
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 2.0e-113 412.9 294 72.1
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 3.5e-113 412.1 294 73.1
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 3.5e-113 412.1 294 72.4
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 1.3e-112 410.2 294 72.4
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 3.8e-112 408.7 294 71.8
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 3.8e-112 408.7 294 69.4
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.5e-111 406.8 293 73.4
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.5e-111 406.8 292 69.5
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 5.5e-111 404.8 294 71.8
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.1e-110 402.9 294 71.4
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 3.4e-108 395.6 294 70.4
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 8.3e-107 391.0 299 67.6
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.2e-105 387.1 295 66.1
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 5.0e-104 381.7 232 80.2
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 3.3e-103 379.0 294 67.0
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.6e-102 376.7 293 67.6
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 2.6e-100 369.4 269 72.9
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 5.7e-100 368.2 295 64.1
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.7e-99 366.7 297 64.3
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.9e-99 365.2 300 65.3
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 4.9e-99 365.2 295 65.1
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 3.2e-98 362.5 294 68.0
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 9.2e-98 360.9 294 65.3
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 3.9e-96 355.5 210 85.2
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 4.7e-94 348.6 262 69.8
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 2.3e-93 346.3 241 75.1
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 3.1e-93 345.9 229 71.2
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 2.9e-91 339.3 191 85.3
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 8.1e-86 321.2 288 58.7
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.2e-81 307.4 287 55.7
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 4.9e-75 285.4 184 73.4
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 6.4e-75 285.0 297 52.9
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 8.4e-75 284.6 298 52.0
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.3e-72 276.6 198 65.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.6e-70 270.4 209 66.0
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 1.9e-66 256.9 296 50.0
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.5e-63 246.5 292 49.3
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.3e-56 224.2 297 47.1
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.3e-56 224.2 297 47.1
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.3e-56 224.2 297 47.1
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.6e-54 216.1 265 52.5
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 6.0e-49 198.7 108 90.7
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.8e-48 197.2 153 69.9
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.1e-46 190.3 105 87.6
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 3.9e-40 169.5 230 44.3
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 6.7e-40 168.7 153 60.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.9e-39 167.2 153 59.5
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.9e-39 167.2 153 59.5
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 7.6e-36 155.2 194 44.8
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 2.1e-33 147.1 85 82.4
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.1e-31 141.4 105 70.5
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.8e-30 136.7 109 64.2
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 3.8e-27 126.3 73 82.2
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 3.8e-27 126.3 73 82.2
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.4e-26 124.4 72 81.9
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.4e-21 107.8 68 75.0
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 2.6e-20 103.6 95 60.0
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.5e-20 102.8 60 78.3
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 7.7e-20 102.1 190 37.9
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.3e-19 101.3 128 46.1
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 1.1e-15 88.2 59 71.2
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 8.2e-14 82.0 86 52.3
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 7.0e-13 79.0 231 29.4
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.3e-11 74.7 58 65.5


User provided reference genes

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