Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 2109.7 1054 100.0
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1697.6 1057 79.5
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1694.9 1057 79.3
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1670.6 1057 78.4
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1666.0 1057 79.0
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1661.4 1059 78.7
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1658.7 1057 77.6
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1651.0 1057 77.5
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1650.6 1059 77.3
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1649.8 1057 77.5
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1645.6 1057 77.5
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1639.0 1056 77.4
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1635.9 1057 77.1
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1635.5 1057 77.8
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1634.8 1059 76.9
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1632.5 1057 77.7
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1623.2 1057 76.7
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1619.0 1054 76.3
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1619.0 1057 76.3
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1619.0 1059 76.0
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1617.8 1057 76.8
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1614.0 1057 76.1
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1611.3 1057 76.3
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1609.3 1055 75.6
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1602.4 1056 75.5
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1600.9 1057 75.8
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1599.3 1064 75.1
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1596.3 1058 74.7
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1593.2 1122 71.7
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1590.1 1057 74.0
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1588.9 1148 71.2
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1587.8 1041 76.5
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1586.2 1059 73.8
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1585.5 1076 74.4
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1585.5 1076 74.4
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1582.4 1058 74.4
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1578.5 1056 74.1
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1577.8 1057 73.9
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1573.9 1056 73.2
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1573.5 1143 70.6
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1573.5 1059 73.6
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1568.1 1057 74.1
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1567.7 1054 74.6
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1561.2 1057 72.9
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1559.7 1055 73.1
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1559.3 1057 72.8
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1557.0 1057 73.2
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1556.2 1058 73.4
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1553.9 1064 73.2
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1552.7 1064 73.1
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1552.0 1042 75.0
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1541.9 1047 73.0
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1540.8 1056 72.4
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1539.6 1063 73.4
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1535.4 1055 72.5
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1528.5 1058 72.3
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1527.3 1055 71.8
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1523.5 1095 69.9
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1523.5 1057 72.6
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1521.1 1056 71.2
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1518.4 961 79.0
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1518.1 1058 71.9
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1515.7 1057 70.5
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1515.7 1057 72.7
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1512.7 1054 70.6
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1511.5 1059 71.7
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1508.4 1058 70.7
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1505.3 1058 70.7
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1501.9 1058 71.1
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1500.3 1134 68.5
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1497.3 1057 71.6
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1493.8 1264 61.6
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1490.3 1054 70.7
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1488.8 1056 70.0
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1486.1 975 76.2
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1480.3 1059 68.9
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1478.8 1057 70.0
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1477.6 1067 71.2
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1477.2 1057 69.5
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1451.8 1057 69.6
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1439.9 1066 68.8
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1439.9 1057 68.3
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1431.8 1063 68.0
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1428.7 949 75.9
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1421.8 1061 67.1
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1418.7 1064 67.7
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1344.3 856 77.6
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1321.6 846 77.0
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1315.4 1056 63.3
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1288.1 853 74.3
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1277.3 802 78.6
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1147.5 791 70.7
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1112.4 1074 54.7
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1107.0 960 60.9
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1096.3 791 70.8
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 4.6e-309 1064.7 1062 53.0
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.5e-291 1006.5 1075 50.3
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 2.0e-283 979.5 785 65.1
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 1.8e-281 973.0 949 57.6
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 7.7e-272 941.0 634 73.0
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.6e-248 863.6 517 78.7
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 1.6e-245 853.6 661 64.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 6.4e-242 841.6 518 77.2
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.2e-219 767.7 450 79.3
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 2.6e-219 766.5 450 78.9
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 9.9e-219 764.6 470 76.4
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 8.4e-218 761.5 453 78.6
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 9.6e-214 748.0 698 56.7
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 2.6e-211 740.0 496 70.8
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.1e-209 734.6 450 76.0
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 9.3e-209 731.5 457 74.6
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 2.5e-206 723.4 471 71.8
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 3.1e-204 716.5 450 75.1
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.9e-193 680.6 485 67.6
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.8e-191 674.1 452 69.5
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 9.6e-190 668.3 450 70.9
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.6e-176 624.4 461 66.6
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 3.9e-175 619.8 431 72.6
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 5.7e-174 615.9 449 67.3
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.0e-171 607.4 450 65.3
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 4.8e-165 586.3 400 74.2
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.4e-156 558.1 406 70.0
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 5.0e-154 549.7 615 52.5
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 9.4e-153 545.4 366 71.3
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 9.4e-153 545.4 366 70.8
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.0e-143 515.4 1111 32.5
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 1.9e-129 468.0 267 82.8
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 1.5e-118 431.8 260 79.6
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 1.3e-117 428.7 286 73.1
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.5e-113 415.2 271 73.4
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 4.1e-108 397.1 266 74.8
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 1.2e-104 385.6 319 64.6
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.2e-104 385.6 216 86.1
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 6.2e-104 383.3 237 78.9
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 6.8e-103 379.8 238 75.6
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 3.3e-73 281.2 155 83.2
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 1.9e-65 255.4 211 62.1
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 2.2e-64 251.9 287 48.8
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 8.5e-61 240.0 209 63.6
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 2.1e-51 208.8 183 64.5
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 2.2e-45 188.7 155 65.2
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 8.5e-45 186.8 122 71.3
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 5.5e-44 184.1 156 58.3
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 2.6e-41 175.3 177 57.6
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 2.6e-38 165.2 110 76.4
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 8.8e-34 150.2 137 53.3
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 2.6e-33 148.7 137 54.0
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 1.8e-31 142.5 97 74.2
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 4.5e-30 137.9 83 72.3
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 1.0e-29 136.7 107 67.3
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.1e-28 133.3 85 70.6
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 4.2e-28 131.3 96 61.5
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.2e-25 123.2 96 58.3
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 1.3e-21 109.8 55 87.3
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 1.7e-21 109.4 58 84.5
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 4.7e-19 101.3 82 63.4
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 1.4e-18 99.8 78 66.7
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 6.8e-18 97.4 62 75.8
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 3.2e-15 88.6 83 49.4
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 4.1e-15 88.2 78 61.5
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 2.7e-14 85.5 74 63.5
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.3e-13 82.4 74 55.4
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 2.3e-13 82.4 56 62.5
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 2.3e-13 82.4 54 81.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 8.9e-10 70.5 74 48.6
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 1.2e-09 70.1 41 75.6
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 5.8e-09 67.8 44 68.2
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.3e-08 66.6 45 77.8
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 8.3e-08 63.9 63 60.3


User provided reference genes

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