Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G1066 Cannabis sativa HOM05D006314 ORTHO05D007970 1.0e-128 463.8 296 100.0
Manes.14G141100 Manihot esculenta HOM05D006314 ORTHO05D007970 3.6e-78 295.8 239 78.2
Prupe.4G027100 Prunus persica HOM05D006314 ORTHO05D007970 4.8e-78 295.4 242 73.1
QL05p075316 Quercus lobata HOM05D006314 ORTHO05D007970 1.8e-77 293.5 298 63.8
CiPaw.09G086300 Carya illinoinensis HOM05D006314 ORTHO05D007970 5.3e-77 292.0 303 61.7
CiPaw.09G085200 Carya illinoinensis HOM05D006314 ORTHO05D007970 2.0e-76 290.0 252 68.7
Cfa021643 Carpinus fangiana HOM05D006314 ORTHO05D007970 5.8e-76 288.5 248 75.0
Nn1g03656 Nelumbo nucifera HOM05D006314 ORTHO05D007970 2.2e-75 286.6 240 77.5
GSVIVG01012621001 Vitis vinifera HOM05D006314 ORTHO05D007970 4.9e-75 285.4 296 59.8
MD05G1340500 Malus domestica HOM05D006314 ORTHO05D007970 1.0e-72 277.7 295 63.7
Ciclev10018286m.g Citrus clementina HOM05D006314 ORTHO05D007970 3.0e-72 276.2 236 79.7
Potri.004G039400 Populus trichocarpa HOM05D006314 ORTHO05D007970 1.9e-71 273.5 251 68.9
ECA236G4636 Erigeron canadensis HOM05D006314 ORTHO05D007970 5.6e-71 271.9 243 67.5
AL7G32880 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.3e-70 270.8 264 67.4
Aqoxy5G01372 Aquilegia oxysepala HOM05D006314 ORTHO05D007970 2.8e-70 269.6 230 74.3
ATR0618G448 Amborella trichopoda HOM05D006314 ORTHO05D007970 1.1e-69 267.7 235 73.6
AL6G48810 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.1e-69 267.7 249 59.0
AT4G05210 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.1e-69 267.7 242 69.8
BcaB01g01893 Brassica carinata HOM05D006314 ORTHO05D007970 2.4e-69 266.5 231 72.7
HanXRQChr05g0130041 Helianthus annuus HOM05D006314 ORTHO05D007970 5.3e-69 265.4 295 61.4
A09p25520 Brassica napus HOM05D006314 ORTHO05D007970 9.0e-69 264.6 250 68.4
BcaC04g21385 Brassica carinata HOM05D006314 ORTHO05D007970 1.2e-68 264.2 250 68.0
C09p32430 Brassica napus HOM05D006314 ORTHO05D007970 1.2e-68 264.2 250 68.0
BolC9t56088H Brassica oleracea HOM05D006314 ORTHO05D007970 1.2e-68 264.2 250 68.0
Gorai.010G176200 Gossypium raimondii HOM05D006314 ORTHO05D007970 1.5e-68 263.8 298 59.1
Carub.0007s2019 Capsella rubella HOM05D006314 ORTHO05D007970 2.0e-68 263.5 276 64.5
COL.COLO4_31719 Corchorus olitorius HOM05D006314 ORTHO05D007970 2.0e-68 263.5 290 60.7
EL10Ac8g19905 Beta vulgaris HOM05D006314 ORTHO05D007970 3.4e-68 262.7 251 67.7
AT4G21220 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 5.8e-68 261.9 231 71.4
Lsat_1_v5_gn_7_17861 Lactuca sativa HOM05D006314 ORTHO05D007970 7.6e-68 261.5 245 70.2
BraA09t38127Z Brassica rapa HOM05D006314 ORTHO05D007970 1.3e-67 260.8 250 67.6
CsaV3_6G049280 Cucumis sativus L. HOM05D006314 ORTHO05D007970 1.7e-67 260.4 249 67.9
CARHR227820 Cardamine hirsuta HOM05D006314 ORTHO05D007970 4.9e-67 258.8 231 81.0
Gohir.A06G145000 Gossypium hirsutum HOM05D006314 ORTHO05D007970 6.5e-67 258.5 299 53.8
Actinidia05538 Actinidia chinensis HOM05D006314 ORTHO05D007970 1.1e-66 257.7 242 76.4
CAN.G404.73 Capsicum annuum HOM05D006314 ORTHO05D007970 1.1e-66 257.7 239 68.2
SGA_v2.0_scaffold7G03887 Striga asiatica HOM05D006314 ORTHO05D007970 1.1e-66 257.7 226 69.5
Thhalv10025838m.g Eutrema salsugineum HOM05D006314 ORTHO05D007970 2.5e-66 256.5 245 73.1
Hund21374 Selenicereus undatus HOM05D006314 ORTHO05D007970 3.2e-66 256.1 228 65.8
Solyc03g031560.4 Solanum lycopersicum HOM05D006314 ORTHO05D007970 7.1e-66 255.0 253 66.8
PGR031G0385 Punica granatum HOM05D006314 ORTHO05D007970 1.2e-65 254.2 276 68.5
RcHm_v2.0_Chr5g0004131 Rosa chinensis HOM05D006314 ORTHO05D007970 2.7e-65 253.1 297 62.0
Haze_06726 Corylus avellana HOM05D006314 ORTHO05D007970 3.5e-65 252.7 292 53.8
SalBow8G4748 Salvia bowleyana HOM05D006314 ORTHO05D007970 4.6e-65 252.3 279 58.4
Actinidia26953 Actinidia chinensis HOM05D006314 ORTHO05D007970 1.0e-64 251.1 169 78.7
Ah.14g088200 Amaranthus hybridus HOM05D006314 ORTHO05D007970 1.0e-64 251.1 230 66.1
Migut.M01276 Erythranthe guttata HOM05D006314 ORTHO05D007970 3.9e-64 249.2 256 63.3
Duzib235G0913 Durio zibethinus HOM05D006314 ORTHO05D007970 5.1e-64 248.8 308 51.6
Haze_06729 Corylus avellana HOM05D006314 ORTHO05D007970 1.5e-63 247.3 173 78.6
Sabra04G0024200 Salix brachista HOM05D006314 ORTHO05D007970 7.4e-63 245.0 274 54.0
Eucgr.D00832 Eucalyptus grandis HOM05D006314 ORTHO05D007970 1.6e-62 243.8 238 72.3
ClCG01G022220 Citrullus lanatus HOM05D006314 ORTHO05D007970 3.7e-62 242.7 242 72.7
FvH4_3g02730 Fragaria vesca HOM05D006314 ORTHO05D007970 3.7e-62 242.7 238 70.6
Sopen03g005440 Solanum pennellii HOM05D006314 ORTHO05D007970 6.3e-62 241.9 239 76.6
FAN21G1433 Fragaria x ananassa HOM05D006314 ORTHO05D007970 2.4e-61 240.0 253 59.7
MELO3C007369.2 Cucumis melo HOM05D006314 ORTHO05D007970 3.1e-61 239.6 232 69.4
DCAR_004187 Daucus carota HOM05D006314 ORTHO05D007970 4.1e-61 239.2 247 69.2
HPP92_009395 Vanilla planifolia HOM05D006314 ORTHO05D007970 5.3e-61 238.8 241 67.6
HPP92_009390 Vanilla planifolia HOM05D006314 ORTHO05D007970 2.0e-60 236.9 240 65.4
Aa31LG9G9230 Aethionema arabicum HOM05D006314 ORTHO05D007970 2.6e-60 236.5 305 57.0
Lj1A1224T36 Lonicera japonica HOM05D006314 ORTHO05D007970 4.5e-60 235.7 222 75.2
CDE05G2602 Ceratophyllum demersum HOM05D006314 ORTHO05D007970 2.9e-59 233.0 232 66.4
SEGI_37493 Sequoiadendron giganteum HOM05D006314 ORTHO05D007970 2.9e-59 233.0 242 53.7
THA.LOC104812945 Tarenaya hassleriana HOM05D006314 ORTHO05D007970 1.4e-58 230.7 305 61.3
Oeu002711.1 Olea europaea HOM05D006314 ORTHO05D007970 1.9e-58 230.3 238 65.5
Cc00_g17320 Coffea canephora HOM05D006314 ORTHO05D007970 7.2e-58 228.4 230 73.9
MBI02_g34312_MAGBIO Magnolia biondii HOM05D006314 ORTHO05D007970 7.2e-58 228.4 254 65.0
VMungo1215G0781 Vigna mungo HOM05D006314 ORTHO05D007970 5.1e-56 222.2 270 58.1
Glyma.01G240700 Glycine max HOM05D006314 ORTHO05D007970 1.5e-55 220.7 235 64.7
Cpa.g.sc81.24 Carica papaya HOM05D006314 ORTHO05D007970 1.9e-55 220.3 238 58.4
Lj1g0010466 Lotus japonicus HOM05D006314 ORTHO05D007970 9.7e-55 218.0 242 60.7
FAN25G2977 Fragaria x ananassa HOM05D006314 ORTHO05D007970 2.2e-54 216.9 284 53.5
PSO541G6217 Papaver somniferum HOM05D006314 ORTHO05D007970 2.2e-54 216.9 254 54.7
PSO675G3227 Papaver somniferum HOM05D006314 ORTHO05D007970 6.3e-54 215.3 254 54.7
Sp6g03780 Schrenkiella parvula HOM05D006314 ORTHO05D007970 6.3e-54 215.3 248 69.0
Gohir.D06G151200 Gossypium hirsutum HOM05D006314 ORTHO05D007970 1.4e-53 214.2 236 51.3
Medtr7g047630 Medicago truncatula HOM05D006314 ORTHO05D007970 2.4e-53 213.4 222 65.8
Medtr7g451810 Medicago truncatula HOM05D006314 ORTHO05D007970 2.4e-53 213.4 222 65.8
Phvul.002G049200 Phaseolus vulgaris HOM05D006314 ORTHO05D007970 3.1e-53 213.0 253 59.3
TPR.G10185 Trifolium pratense HOM05D006314 ORTHO05D007970 4.1e-53 212.6 222 66.2
Mapoly0013s0096 Marchantia polymorpha HOM05D006314 ORTHO05D007970 9.1e-53 211.5 228 59.2
Thecc.06G213300 Theobroma cacao HOM05D006314 ORTHO05D007970 9.1e-53 211.5 234 59.4
Rhsim13G0158200 Rhododendron simsii HOM05D006314 ORTHO05D007970 1.0e-51 208.0 305 55.7
Lalb_Chr16g0376341 Lupinus albus HOM05D006314 ORTHO05D007970 1.9e-50 203.8 234 67.9
AUR62012635 Chenopodium quinoa HOM05D006314 ORTHO05D007970 1.2e-49 201.1 309 52.8
AagrBONN_evm.TU.Sc2ySwM_228.2540 Anthoceros agrestis HOM05D006314 ORTHO05D007970 1.6e-49 200.7 280 58.2
CBR_g20160 Chara braunii HOM05D006314 ORTHO05D007970 1.6e-49 200.7 165 70.3
Zm00001eb306890 Zea mays HOM05D006314 ORTHO05D007970 1.6e-49 200.7 231 71.0
vmacro03713 Vaccinium macrocarpon HOM05D006314 ORTHO05D007970 2.1e-49 200.3 168 71.4
Ca_07429_v3 Cicer arietinum L. HOM05D006314 ORTHO05D007970 6.1e-49 198.7 230 60.4
Dinv17838 Davidia involucrata HOM05D006314 ORTHO05D007970 1.4e-48 197.6 162 77.2
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 1.1e-47 194.5 169 79.3
Nitab4.5_0004428g0040 Nicotiana tabacum HOM05D006314 ORTHO05D007970 6.3e-46 188.7 233 44.2
TWI38G0264 Tripterygium wilfordii HOM05D006314 ORTHO05D007970 6.9e-45 185.3 290 47.9
Glyma.11G002900 Glycine max HOM05D006314 ORTHO05D007970 2.0e-44 183.7 161 60.9
Pp3c4_25780 Physcomitrium patens HOM05D006314 ORTHO05D007970 2.5e-42 176.8 227 65.2
AUR62022021 Chenopodium quinoa HOM05D006314 ORTHO05D007970 4.2e-42 176.0 253 51.4
Nitab4.5_0000900g0100 Nicotiana tabacum HOM05D006314 ORTHO05D007970 6.1e-41 172.2 233 50.6
Psat3g152680 Pisum sativum HOM05D006314 ORTHO05D007970 1.4e-40 171.0 167 68.9
Sc05g0008810 Simmondsia chinensis HOM05D006314 ORTHO05D007970 1.8e-40 170.6 281 49.8
Hma1.2p1_0729F.1_g209630 Hydrangea macrophylla HOM05D006314 ORTHO05D007970 5.7e-39 165.6 176 49.4
arahy.Tifrunner.gnm1.ann1.937J55 Arachis hypogaea HOM05D006314 ORTHO05D007970 1.3e-38 164.5 214 63.6
arahy.Tifrunner.gnm1.ann1.PEH28W Arachis hypogaea HOM05D006314 ORTHO05D007970 1.7e-38 164.1 221 62.0
Nn5g27983 Nelumbo nucifera HOM05D006314 ORTHO05D007970 2.8e-38 163.3 122 64.8
CSS0045332 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 4.5e-36 156.0 129 76.0
PRCOL_00005452 Prasinoderma coloniale HOM05D006314 ORTHO05D007970 1.2e-33 147.9 173 54.3
TAR627G0699 Trochodendron aralioides HOM05D006314 ORTHO05D007970 8.0e-33 145.2 107 81.3
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 1.5e-31 141.0 144 51.4
Sed0025568 Sechium edule HOM05D006314 ORTHO05D007970 3.3e-31 139.8 231 56.7
SMO004G0010 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 3.5e-28 129.8 232 44.4
Peaxi162Scf00781g00047 Petunia axillaris HOM05D006314 ORTHO05D007970 1.6e-25 120.9 269 41.6
CSS0018641 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 2.0e-20 104.0 108 75.0
MSTRG.16127 Avicennia marina HOM05D006314 ORTHO05D007970 5.0e-19 99.4 168 37.5
SMO361G0013 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 1.5e-15 87.8 213 39.9
Os07g0134400 Oryza sativa ssp. japonica HOM05D006314 ORTHO05D007970 7.5e-15 85.5 120 61.7
FAN25G3594 Fragaria x ananassa HOM05D006314 ORTHO05D007970 2.0e-12 77.4 42 83.3
FvH4_3g02750 Fragaria vesca HOM05D006314 ORTHO05D007970 3.7e-06 56.6 71 46.5
MD10G1314000 Malus domestica HOM05D006314 ORTHO05D007970 3.7e-06 56.6 35 68.6


User provided reference genes

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