Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.4e-251 871.7 436 100.0
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 4.8e-151 538.5 418 66.5
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 6.2e-151 538.1 427 68.1
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 2.5e-144 516.2 420 62.9
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.7e-143 512.3 419 64.7
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.8e-142 510.0 433 62.4
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 8.4e-140 501.1 453 60.3
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.7e-138 496.1 431 60.3
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.1e-137 491.9 423 62.9
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.5e-136 490.3 427 63.0
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.3e-135 487.3 432 58.3
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 2.8e-135 486.1 385 65.5
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 8.2e-135 484.6 414 63.8
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 8.2e-135 484.6 464 56.9
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 2.4e-134 483.0 424 59.2
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 4.0e-134 482.3 424 60.1
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 9.0e-134 481.1 432 59.3
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.5e-133 480.3 426 59.6
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.5e-133 480.3 426 59.6
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.9e-131 473.4 415 58.3
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.5e-131 473.0 422 59.2
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.5e-131 473.0 415 60.2
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 5.5e-131 471.9 424 59.4
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.6e-130 470.3 422 59.0
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 2.1e-130 469.9 415 59.8
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 7.9e-130 468.0 413 61.3
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.8e-129 466.8 418 59.1
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.0e-129 466.1 415 59.3
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 8.7e-129 464.5 412 60.4
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 1.1e-128 464.2 426 59.9
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 3.3e-128 462.6 435 56.8
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 9.7e-128 461.1 416 59.1
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 1.6e-127 460.3 427 58.8
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 2.8e-127 459.5 426 58.0
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 2.8e-127 459.5 442 56.8
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.7e-127 459.1 416 60.8
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 4.8e-127 458.8 443 58.7
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 1.1e-126 457.6 431 58.9
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.4e-126 457.2 437 56.8
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 3.1e-126 456.1 427 61.1
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 5.3e-126 455.3 426 57.5
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.5e-125 453.8 437 56.5
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 3.4e-125 452.6 423 58.9
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 3.8e-124 449.1 424 58.7
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.9e-123 446.8 417 56.8
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 3.2e-123 446.0 432 55.6
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.1e-122 443.4 431 55.2
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 2.7e-122 443.0 437 54.7
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 2.7e-122 443.0 417 55.9
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.7e-122 443.0 421 58.0
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 7.9e-122 441.4 416 58.9
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 5.1e-121 438.7 419 58.5
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 6.7e-121 438.3 432 54.4
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 8.8e-121 438.0 432 54.4
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 2.5e-120 436.4 422 56.2
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.3e-120 436.0 454 54.2
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 5.7e-120 435.3 427 55.5
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 5.7e-120 435.3 382 61.0
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.2e-119 433.3 438 54.3
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 6.3e-119 431.8 423 53.9
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 8.2e-119 431.4 438 54.1
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.1e-118 431.0 425 54.1
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.8e-118 430.3 421 54.9
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.1e-118 429.5 421 55.3
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 3.1e-118 429.5 415 55.9
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 6.9e-118 428.3 420 55.0
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 9.1e-118 427.9 444 53.4
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 2.0e-117 426.8 363 60.3
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 2.6e-117 426.4 426 54.9
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 8.5e-116 421.4 447 52.8
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.4e-115 420.6 341 66.0
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.9e-115 420.2 369 60.7
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.9e-115 420.2 422 55.0
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 4.2e-115 419.1 396 56.1
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 5.5e-115 418.7 438 52.3
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 7.2e-115 418.3 428 53.0
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.6e-114 417.2 356 63.5
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 3.6e-114 416.0 361 60.4
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 5.1e-113 412.1 455 53.6
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.7e-111 407.1 379 58.6
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 1.4e-110 404.1 386 57.8
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 4.1e-110 402.5 360 62.8
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.5e-109 399.4 423 55.1
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 7.2e-107 391.7 376 58.2
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.6e-106 390.6 386 54.1
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.6e-104 383.3 406 52.5
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 5.7e-104 382.1 396 53.8
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 5.0e-100 369.0 334 61.1
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.9e-99 367.1 357 55.2
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 8.3e-95 351.7 387 50.4
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 7.0e-94 348.6 427 48.2
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.7e-93 346.7 394 50.5
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 5.5e-91 339.0 322 57.5
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 9.1e-86 321.6 390 50.3
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 2.3e-84 317.0 432 44.9
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 3.8e-84 316.2 440 43.4
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 2.2e-79 300.4 278 57.9
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 6.3e-79 298.9 278 57.6
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 2.4e-78 297.0 513 36.8
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.7e-77 293.5 219 68.0
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.5e-77 293.1 299 58.5
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.4e-70 271.2 512 37.1
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 4.1e-70 269.6 351 47.6
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 4.1e-70 269.6 427 43.1
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 2.0e-64 250.8 445 37.5
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.2e-63 247.3 181 67.4
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 2.2e-63 247.3 335 44.8
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 1.1e-62 245.0 284 51.1
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 9.2e-62 241.9 246 55.3
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-61 241.5 191 63.9
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.6e-58 231.1 271 50.9
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 2.1e-58 230.7 270 49.3
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 2.8e-58 230.3 313 49.5
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 1.6e-53 214.5 356 39.0
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 6.2e-50 202.6 418 34.9
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 3.4e-48 196.8 172 61.0
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 7.1e-46 189.1 214 51.4
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 6.0e-45 186.0 182 56.6
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.4e-41 174.9 276 40.9
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 7.6e-40 169.1 196 50.0
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.7e-39 167.9 141 65.2
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.7e-36 157.9 440 31.1
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.1e-33 147.1 109 63.3
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 3.1e-33 147.1 112 62.5
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 8.4e-31 139.0 127 56.7
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.9e-30 137.9 436 29.8
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 3.0e-28 130.6 85 74.1
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 3.9e-28 130.2 93 67.7
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 8.7e-28 129.0 415 27.0
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 5.6e-27 126.3 99 66.7
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 7.4e-27 125.9 819 22.6
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.8e-26 124.0 164 47.0
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 3.1e-25 120.6 87 72.4
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 3.2e-22 110.5 136 46.3
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 3.2e-14 84.0 109 45.9
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 5.5e-14 83.2 315 26.0
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 2.5e-11 74.3 297 25.6
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 7.4e-11 72.8 271 26.9
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 9.7e-11 72.4 62 59.7


User provided reference genes

Program Settings