Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 7.0e-198 693.7 343 100.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 5.3e-129 464.9 326 68.1
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 2.2e-127 459.5 328 68.0
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 4.9e-127 458.4 310 69.4
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.6e-125 453.4 298 71.8
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 4.6e-125 451.8 336 67.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 4.6e-125 451.8 295 71.5
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 7.9e-125 451.1 348 64.7
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 1.3e-124 450.3 303 69.3
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 3.3e-123 445.7 328 66.2
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 3.7e-122 442.2 331 65.0
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.8e-122 441.8 329 65.3
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.1e-121 440.7 331 64.7
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.1e-121 440.7 291 70.1
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 1.8e-121 439.9 313 67.7
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 6.9e-121 438.0 281 72.2
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 9.0e-121 437.6 298 68.1
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.2e-120 437.2 323 65.9
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 2.0e-120 436.4 334 64.1
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 5.8e-120 434.9 298 68.1
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 9.9e-120 434.1 315 65.1
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 9.9e-120 434.1 337 64.1
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.7e-119 433.3 351 61.8
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.1e-118 430.6 344 62.2
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.9e-118 429.9 295 69.5
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 5.5e-118 428.3 323 63.5
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.6e-117 426.8 309 64.4
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 2.1e-117 426.4 282 69.5
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.8e-116 423.3 322 61.8
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 2.3e-116 422.9 308 66.6
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 5.1e-116 421.8 294 67.3
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 3.3e-115 419.1 282 70.9
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 5.6e-115 418.3 311 64.6
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 7.4e-115 417.9 290 67.9
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.6e-114 416.8 342 61.7
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 2.8e-114 416.0 281 69.0
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 6.2e-114 414.8 282 69.5
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 6.2e-114 414.8 333 62.5
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 3.1e-113 412.5 284 68.7
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.2e-112 410.6 287 67.2
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 3.4e-112 409.1 287 66.6
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 5.8e-112 408.3 293 67.2
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.2e-111 406.4 285 64.6
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.9e-111 406.0 281 68.3
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.1e-110 404.1 284 63.7
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.0e-108 397.5 281 64.4
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.3e-108 397.1 323 58.8
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.3e-108 397.1 322 58.7
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 2.3e-108 396.4 256 70.7
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.7e-108 394.8 291 63.2
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 6.7e-108 394.8 332 59.9
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 8.7e-108 394.4 288 63.9
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.1e-107 394.0 259 69.5
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.1e-107 394.0 291 64.9
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 5.7e-107 391.7 321 54.8
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.6e-106 390.2 284 62.7
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 4.8e-106 388.7 247 72.5
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.4e-105 387.1 321 54.5
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.8e-105 386.7 321 55.1
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.4e-105 386.3 330 55.5
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 2.4e-105 386.3 326 55.5
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 4.1e-105 385.6 330 55.8
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 6.9e-105 384.8 317 55.5
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 6.9e-105 384.8 326 55.5
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 6.9e-105 384.8 282 61.0
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 9.0e-105 384.4 253 71.5
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 9.0e-105 384.4 316 59.2
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.2e-104 384.0 326 54.9
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 2.6e-104 382.9 321 55.8
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 5.9e-104 381.7 326 54.6
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 5.9e-104 381.7 320 54.1
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 7.7e-104 381.3 322 54.3
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.7e-103 380.2 262 66.0
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.7e-103 380.2 326 54.6
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 2.2e-103 379.8 321 54.5
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 3.8e-103 379.0 250 70.4
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.9e-102 376.7 248 69.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 7.2e-102 374.8 253 67.2
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 9.4e-102 374.4 299 58.5
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 5.1e-100 368.6 231 71.4
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 5.3e-97 358.6 282 60.6
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.0e-96 356.7 298 60.1
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.7e-95 353.6 330 57.0
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.7e-95 353.6 353 54.1
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 6.5e-95 351.7 257 61.1
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.2e-94 348.2 285 57.5
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 2.1e-93 346.7 302 54.0
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 6.7e-92 341.7 298 53.7
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.0e-91 340.1 226 72.1
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 9.7e-91 337.8 322 50.0
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 6.3e-90 335.1 282 59.6
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.3e-84 316.6 285 54.7
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 3.9e-84 315.8 265 60.0
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 3.9e-84 315.8 332 51.8
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 3.1e-81 306.2 284 54.9
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.3e-79 300.8 189 69.8
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.1e-78 297.7 560 34.5
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.2e-77 294.3 196 66.8
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 4.7e-77 292.4 278 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 5.2e-76 288.9 279 48.4
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 8.8e-76 288.1 190 66.3
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.8e-74 282.3 306 49.0
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 2.0e-72 276.9 278 48.9
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 1.6e-69 267.3 302 43.4
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 2.7e-69 266.5 165 70.3
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 4.4e-67 259.2 156 74.4
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.3e-63 247.7 291 48.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.4e-60 237.7 156 66.0
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 8.6e-55 218.4 178 57.9
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 4.7e-53 212.6 152 63.2
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 6.8e-52 208.8 166 60.8
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.8e-51 205.7 241 47.7
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.7e-50 203.0 241 46.9
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 8.0e-45 185.3 129 69.8
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 2.2e-42 177.2 129 61.2
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.1e-41 174.9 116 64.7
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 4.6e-40 169.5 216 35.2
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.7e-39 167.5 148 56.8
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.5e-38 164.5 199 46.2
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 9.5e-38 161.8 277 36.8
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.6e-37 159.8 231 42.9
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 4.0e-36 156.4 142 62.0
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 3.7e-34 149.8 126 58.7
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 6.0e-32 142.5 128 56.2
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.4e-28 130.6 77 72.7
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.2e-27 128.3 102 59.8
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 2.9e-26 123.6 100 59.0
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 7.8e-24 115.5 165 43.6
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.8e-20 104.4 76 57.9
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.7e-16 90.5 102 52.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.7e-16 90.5 67 65.7
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.1e-14 85.1 108 50.9
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.4e-09 68.2 85 44.7
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 1.0e-07 62.0 41 78.0


User provided reference genes

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