Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1664.0 907 100.0
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1329.7 848 81.1
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1325.8 911 80.8
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1323.9 917 74.7
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1315.1 915 79.8
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1302.0 904 80.2
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1301.2 844 79.4
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1298.1 912 79.4
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1297.3 908 74.1
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1297.0 925 78.3
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1295.4 927 78.2
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1290.8 916 78.7
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1286.9 851 80.1
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1281.9 905 76.0
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1279.6 848 75.2
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1276.5 848 76.7
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1276.5 849 76.3
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1276.2 849 77.4
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1275.0 849 78.9
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1273.5 838 76.8
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1272.7 849 79.2
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1272.3 849 78.8
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1269.2 849 78.7
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1265.4 908 74.6
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1263.8 908 74.8
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1263.8 848 78.7
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1263.1 848 78.5
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1263.1 848 78.2
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1262.3 875 80.7
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1259.6 847 78.3
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1259.2 907 74.6
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1258.4 849 78.3
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1256.5 849 77.9
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1255.0 903 77.4
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1254.6 907 76.5
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1253.0 850 77.2
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1251.9 848 76.9
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1249.6 848 74.2
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1248.0 902 73.3
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1247.3 872 74.5
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1246.9 848 77.0
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1243.0 848 77.0
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1242.6 873 75.4
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1242.3 873 74.1
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1239.2 859 75.3
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1238.4 904 73.1
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1237.6 870 74.6
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1237.2 848 76.5
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1235.7 853 78.4
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1234.9 851 73.9
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1233.0 853 76.2
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1229.5 859 75.8
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1229.2 852 75.7
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1228.4 853 75.6
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1228.0 854 75.8
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1223.4 852 76.3
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1222.2 891 70.8
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1220.7 904 73.8
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1219.1 855 75.3
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1214.1 863 74.6
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1211.4 887 72.7
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1209.5 890 71.3
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1204.1 877 71.4
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1202.2 848 74.9
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1200.3 902 71.3
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1197.2 850 74.5
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1196.0 848 74.9
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1183.7 847 72.3
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1179.5 850 73.1
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1173.7 910 69.3
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1167.5 848 73.8
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1155.6 853 76.1
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1154.8 911 69.2
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1150.6 908 66.3
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1144.0 914 69.3
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1139.8 855 67.4
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1126.3 874 70.6
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1123.6 857 70.5
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1122.8 848 69.3
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1122.1 847 68.5
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1119.4 840 67.0
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1106.7 845 68.9
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 6.1e-310 1067.4 752 74.5
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 6.1e-310 1067.4 752 74.5
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 6.8e-285 984.2 845 63.4
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 1.1e-261 907.1 643 76.7
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 1.9e-247 859.8 855 55.3
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 9.6e-247 857.4 577 74.5
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 2.2e-243 846.3 638 76.6
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 3.7e-238 828.9 472 84.3
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 1.4e-234 817.0 840 52.4
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 2.1e-233 813.1 494 80.4
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 6.1e-217 758.4 544 71.0
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 1.8e-216 756.9 847 49.7
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 2.6e-207 726.5 529 77.1
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 4.0e-200 702.6 596 69.0
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.0e-187 661.4 508 67.9
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 2.9e-187 659.8 845 43.1
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 8.6e-187 658.3 839 46.0
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.0e-163 580.1 486 68.3
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 9.0e-152 542.0 437 66.4
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 9.9e-143 511.9 853 36.9
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 1.0e-126 458.8 382 67.3
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 6.5e-102 376.3 212 85.4
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 5.7e-98 363.2 209 83.7
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.4e-96 357.8 201 84.6
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 4.2e-93 347.1 329 64.7
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 7.2e-93 346.3 227 73.6
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 4.4e-90 337.0 254 68.1
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.7e-89 335.1 256 69.9
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 5.0e-86 323.6 194 80.9
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 4.2e-85 320.5 223 72.2
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 7.2e-85 319.7 225 71.1
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 8.6e-78 296.2 200 75.0
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 4.4e-50 204.1 136 72.8
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.7e-47 194.9 155 66.5
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 5.1e-46 190.7 111 82.9
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 8.6e-46 189.9 130 70.0
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 5.6e-45 187.2 134 75.4
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 4.7e-44 184.1 121 72.7
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 2.5e-37 161.8 136 66.2
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 6.2e-36 157.1 215 47.0
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 5.3e-35 154.1 102 80.4
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 8.4e-33 146.7 79 86.1
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.4e-21 107.1 82 69.5
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 9.6e-21 106.7 167 40.1
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 1.4e-19 102.8 69 72.5
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.9e-17 95.1 87 54.0
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 8.4e-17 93.6 63 69.8
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.2e-16 91.7 65 70.8
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.2e-15 89.7 59 76.3
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 3.5e-15 88.2 72 59.7
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.5e-15 88.2 72 59.7
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.9e-15 87.0 53 81.1
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 6.7e-14 84.0 65 69.2
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.7e-12 78.2 71 66.2
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 1.9e-08 65.9 228 25.0
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 5.5e-08 64.3 49 71.4
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 5.5e-08 64.3 200 26.5
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 5.5e-08 64.3 106 53.8
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 2.7e-07 62.0 42 73.8
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 3.5e-07 61.6 232 24.6
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 4.6e-07 61.2 267 23.6
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 6.1e-07 60.8 65 67.7
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 1.0e-06 60.1 62 53.2
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 8.7e-06 57.0 161 25.5


User provided reference genes

Program Settings