Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 0.0e+00 1446.8 726 100.0
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 9.0e-288 993.4 712 71.1
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 3.2e-285 984.9 723 70.4
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 4.3e-282 974.5 734 69.2
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 3.0e-275 951.8 743 67.0
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 8.2e-273 943.7 745 66.7
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 2.4e-272 942.2 695 69.2
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 9.0e-272 940.3 696 69.1
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.2e-268 929.9 737 65.5
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 3.6e-268 928.3 737 65.3
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.8e-267 926.0 708 68.2
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 3.0e-267 925.2 736 66.7
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 1.7e-265 919.5 690 68.3
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 2.8e-265 918.7 716 67.0
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 1.2e-263 913.3 698 68.3
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 1.7e-262 909.4 747 63.6
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 5.0e-262 907.9 693 67.1
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 1.2e-260 903.3 746 63.9
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 3.6e-260 901.7 727 65.6
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 3.9e-259 898.3 702 66.0
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 2.0e-258 896.0 723 64.5
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.3e-258 895.2 738 64.5
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.3e-257 893.3 720 66.2
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 2.2e-257 892.5 700 66.7
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 3.7e-257 891.7 704 66.6
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 3.7e-257 891.7 738 63.8
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 6.3e-257 891.0 722 63.6
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.8e-256 889.4 704 66.5
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.2e-255 886.7 738 63.6
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 1.9e-253 879.4 702 64.5
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 7.2e-253 877.5 709 64.2
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 5.2e-251 871.3 685 65.3
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 1.5e-250 869.8 711 64.1
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 2.6e-250 869.0 690 65.5
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 2.2e-249 865.9 696 64.7
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 4.8e-249 864.8 721 63.2
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 5.0e-246 854.7 696 64.2
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.5e-245 853.2 718 62.4
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 4.2e-245 851.7 716 62.2
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 2.1e-244 849.4 718 62.1
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 1.8e-243 846.3 703 63.2
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 3.0e-243 845.5 727 62.2
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 3.0e-243 845.5 632 67.6
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 1.2e-242 843.6 702 63.4
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 1.8e-240 836.3 696 63.1
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 1.2e-239 833.6 715 62.5
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 1.6e-239 833.2 715 61.3
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 7.7e-239 830.9 717 62.3
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 2.2e-238 829.3 689 62.4
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 5.0e-238 828.2 694 62.8
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 1.9e-237 826.2 730 61.1
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.9e-237 826.2 701 62.3
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 1.8e-235 819.7 713 60.9
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 1.5e-234 816.6 711 61.9
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 2.0e-234 816.2 703 61.6
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 2.8e-233 812.4 723 60.7
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 1.4e-232 810.1 722 60.9
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 3.1e-232 808.9 766 58.5
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 9.2e-232 807.4 793 56.4
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.2e-231 807.0 733 60.2
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 2.3e-230 802.7 699 60.9
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 8.0e-228 794.3 721 58.1
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 1.8e-227 793.1 697 61.1
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 5.2e-227 791.6 688 62.1
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 3.4e-226 788.9 732 58.3
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.7e-222 776.5 666 63.2
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 3.0e-222 775.8 628 63.1
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 5.6e-221 771.5 534 72.5
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.8e-215 751.1 697 60.0
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 6.6e-214 748.0 752 55.7
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 2.5e-213 746.1 712 57.7
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 3.6e-212 742.3 596 65.6
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.1e-211 740.7 698 58.2
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 7.8e-207 724.5 750 55.1
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 5.6e-205 718.4 531 67.6
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 1.6e-204 716.8 522 67.2
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 2.7e-199 699.5 489 71.6
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 8.6e-198 694.5 693 55.3
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 9.6e-197 691.0 562 65.1
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 1.5e-194 683.7 443 75.8
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 5.4e-192 675.2 569 63.3
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 2.5e-189 666.4 713 53.0
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 7.3e-189 664.8 497 68.4
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 6.9e-187 658.3 703 52.8
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 2.8e-180 636.3 720 47.9
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 2.8e-180 636.3 692 51.0
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.5e-173 614.0 747 46.7
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 2.6e-162 576.6 494 62.8
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 1.3e-158 564.3 411 70.1
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 6.9e-155 552.0 494 59.7
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 8.5e-153 545.0 718 44.0
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 3.8e-137 493.0 409 60.6
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.7e-135 486.9 396 64.4
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.0e-134 485.0 395 63.5
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.5e-133 481.1 395 63.0
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 1.3e-132 478.0 376 66.5
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 8.2e-132 475.3 787 41.0
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 7.0e-131 472.2 351 68.7
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 5.7e-125 452.6 767 37.3
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 6.3e-116 422.5 362 58.6
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 4.3e-112 409.8 865 33.6
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 8.3e-108 395.6 313 65.5
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.6e-106 391.3 708 37.0
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 7.8e-106 389.0 313 64.9
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 2.0e-93 347.8 729 34.4
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 7.5e-93 345.9 340 55.3
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 5.1e-89 333.2 331 53.5
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 3.9e-81 307.0 257 63.8
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.5e-80 305.1 289 58.1
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 2.2e-68 264.6 321 46.4
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.4e-67 261.2 206 65.0
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 2.1e-63 248.1 219 62.1
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 4.8e-63 246.9 163 72.4
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 5.3e-62 243.4 646 30.5
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.5e-61 241.9 273 51.6
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.0e-61 241.5 200 61.5
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 1.5e-56 225.3 174 64.9
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 4.6e-50 203.8 204 56.4
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 1.0e-49 202.6 167 62.3
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 2.3e-49 201.4 155 65.8
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.5e-48 198.7 176 57.4
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 8.8e-33 146.4 156 55.8
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 9.7e-32 142.9 150 54.0
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.4e-30 139.0 149 53.7
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.4e-30 138.3 145 57.2
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 5.0e-28 130.6 130 50.8
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 1.4e-27 129.0 142 53.5
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.3e-25 121.7 136 54.4
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 5.9e-13 80.5 55 63.6
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 3.2e-11 74.7 81 56.8
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 9.4e-11 73.2 76 51.3
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 9.4e-11 73.2 51 64.7
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 2.3e-09 68.6 36 97.2
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 8.3e-07 60.1 157 31.2


User provided reference genes

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