Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 0.0e+00 1146.0 608 100.0
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 3.5e-184 649.0 667 57.1
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 2.3e-183 646.4 647 59.2
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 3.0e-183 646.0 668 56.9
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 6.2e-181 638.3 663 57.2
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 5.2e-180 635.2 656 56.9
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 3.4e-179 632.5 665 55.8
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 4.4e-179 632.1 658 56.4
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 7.5e-179 631.3 663 56.7
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 7.5e-179 631.3 658 58.7
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 7.5e-179 631.3 664 56.5
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.7e-178 630.2 666 56.9
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 3.7e-178 629.0 669 55.9
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 1.1e-177 627.5 660 57.3
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.4e-177 627.1 666 56.0
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-177 627.1 656 57.2
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 2.4e-177 626.3 664 55.9
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 3.2e-177 625.9 665 56.1
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 4.1e-177 625.5 660 56.1
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.1e-177 625.5 657 57.1
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 5.4e-177 625.2 656 57.3
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 2.7e-176 622.9 667 56.7
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.6e-176 622.1 667 55.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.0e-175 620.9 667 55.0
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 1.0e-175 620.9 656 56.7
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.3e-175 619.8 663 55.7
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.3e-175 619.8 665 55.3
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 3.9e-175 619.0 650 57.4
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.6e-175 617.8 662 56.2
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.1e-174 617.5 667 56.2
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.5e-174 616.3 654 56.1
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.5e-174 614.4 655 56.3
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.5e-174 614.4 662 56.0
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.2e-173 614.0 657 54.6
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-173 613.6 662 56.2
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.1e-173 613.2 656 55.8
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 2.8e-173 612.8 665 56.4
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 4.7e-173 612.1 656 55.6
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 6.2e-173 611.7 666 56.2
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 8.1e-173 611.3 655 55.6
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 8.1e-173 611.3 666 55.9
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 8.1e-173 611.3 661 53.7
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.1e-172 609.4 666 55.7
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 5.2e-172 608.6 653 55.3
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 8.9e-172 607.8 657 56.2
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 2.0e-171 606.7 671 53.9
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.4e-171 605.9 665 54.3
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.4e-171 605.5 660 55.9
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 5.8e-171 605.1 661 55.1
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.3e-170 604.0 641 56.0
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 3.7e-170 602.4 665 54.1
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 3.7e-170 602.4 665 54.1
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 3.7e-170 602.4 672 54.6
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 6.4e-170 601.7 658 53.3
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.9e-169 600.1 659 55.2
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 2.4e-169 599.7 662 55.1
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 3.5e-168 595.9 649 55.8
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 3.5e-168 595.9 653 55.6
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 4.6e-168 595.5 649 54.4
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.3e-167 593.2 637 55.6
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 3.0e-167 592.8 649 54.7
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 5.1e-167 592.0 667 53.7
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.9e-166 590.1 638 55.5
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 3.3e-166 589.3 683 52.3
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.3e-166 589.3 667 54.0
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 7.3e-166 588.2 637 54.6
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 9.5e-166 587.8 631 53.9
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.5e-163 580.5 633 54.2
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-163 580.5 655 54.5
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 2.0e-163 580.1 656 53.5
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.6e-163 579.7 650 54.2
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 3.4e-163 579.3 651 53.3
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 5.8e-163 578.6 650 53.5
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 5.8e-163 578.6 650 53.5
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 4.9e-162 575.5 648 54.2
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.1e-161 574.3 660 53.3
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.1e-161 574.3 639 54.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.4e-161 573.9 551 59.3
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.4e-161 573.9 551 59.3
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 1.9e-161 573.5 581 57.7
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 1.9e-161 573.5 651 54.7
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.2e-161 572.8 657 53.9
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 9.2e-161 571.2 655 54.5
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 9.2e-161 571.2 679 52.4
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.5e-160 569.3 654 51.5
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 4.6e-160 568.9 642 52.5
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.0e-159 567.8 648 53.4
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.3e-159 567.4 661 51.7
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 3.9e-159 565.8 647 52.6
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 6.6e-159 565.1 663 52.0
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 8.7e-159 564.7 654 53.1
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.1e-158 564.3 652 53.1
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.5e-158 563.1 648 53.4
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 2.5e-158 563.1 656 52.6
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 3.3e-158 562.8 642 52.5
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 4.3e-158 562.4 656 52.6
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 4.3e-158 562.4 637 53.7
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 5.6e-158 562.0 657 52.5
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 5.6e-158 562.0 667 49.9
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 5.6e-158 562.0 662 52.9
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 7.3e-158 561.6 656 53.0
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 2.1e-157 560.1 638 53.9
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 4.7e-157 558.9 654 53.1
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 6.2e-157 558.5 647 52.9
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.4e-156 557.4 659 51.4
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 4.0e-156 555.8 526 58.7
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 4.0e-156 555.8 672 51.0
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.7e-154 550.4 655 50.4
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 3.8e-154 549.3 662 50.9
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.1e-153 547.7 655 51.0
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.1e-153 547.7 666 49.7
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.4e-153 547.4 628 52.7
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 4.2e-153 545.8 651 51.5
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 5.4e-153 545.4 651 51.3
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 9.3e-153 544.7 655 51.0
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 3.5e-152 542.7 642 51.4
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 7.8e-152 541.6 667 50.7
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 1.0e-151 541.2 636 52.7
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.0e-151 541.2 662 50.3
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.3e-149 534.3 651 52.4
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 2.8e-149 533.1 663 49.2
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.6e-149 532.7 680 48.4
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 3.6e-149 532.7 648 50.9
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 1.4e-148 530.8 641 50.9
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.2e-147 527.7 661 50.4
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 9.9e-147 524.6 643 50.4
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.3e-146 524.2 655 49.6
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.3e-146 524.2 653 49.5
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.3e-146 524.2 633 50.7
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 4.9e-146 522.3 638 50.3
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 2.4e-145 520.0 657 49.2
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.1e-145 518.5 644 49.4
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-144 517.7 616 52.8
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 2.3e-143 513.5 666 48.5
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.6e-141 507.3 662 49.1
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 6.2e-141 505.4 654 49.7
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.2e-139 501.1 616 49.7
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.6e-139 498.4 653 50.4
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.9e-137 493.8 649 48.2
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 3.5e-136 489.6 620 47.9
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.0e-136 488.8 657 46.6
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 2.5e-134 483.4 567 50.1
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 2.5e-134 483.4 655 46.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 8.2e-133 478.4 650 45.7
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 3.9e-127 459.5 525 52.2
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.3e-125 452.2 633 44.4
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.2e-117 427.2 618 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 6.3e-109 399.1 633 43.3
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 5.3e-108 396.0 568 45.8
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.5e-102 377.9 652 41.3
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 2.2e-90 337.4 407 52.1
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 2.9e-90 337.0 633 40.9
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.2e-83 315.1 649 38.5
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 3.3e-81 307.0 409 49.6
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 9.5e-81 305.4 397 51.4
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 4.0e-79 300.1 544 39.2
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 5.2e-79 299.7 404 48.0
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 7.0e-76 289.3 522 40.2
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.8e-74 283.5 219 68.0
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.8e-71 274.6 388 45.1
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.5e-65 255.0 306 48.4
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 5.4e-60 236.5 591 33.0
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 6.6e-58 229.6 613 35.6
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.2e-48 198.7 261 43.3
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 5.4e-28 130.2 106 58.5
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.6e-27 128.6 148 54.1
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 5.1e-26 123.6 78 73.1
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.8e-23 115.2 80 67.5
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 4.9e-21 107.1 394 24.6
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.4e-21 106.7 107 50.5
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 6.0e-19 100.1 201 41.8
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.1e-17 95.9 78 65.4
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.6e-17 93.6 74 58.1
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.1e-15 89.4 134 38.1
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.0e-15 87.4 74 54.1
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 6.1e-11 73.6 50 66.0
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.3e-08 65.9 387 24.0
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.3e-08 65.9 65 58.5
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 3.7e-08 64.3 498 22.3
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.1e-07 62.8 125 41.6


User provided reference genes

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