Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 9.2e-176 620.2 324 100.0
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 3.6e-111 405.6 347 62.0
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 2.0e-109 399.8 334 63.2
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 5.7e-109 398.3 340 64.1
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 2.8e-108 396.0 344 63.1
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 4.8e-108 395.2 343 61.5
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 6.3e-108 394.8 352 61.4
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 1.1e-107 394.0 328 65.5
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 1.8e-107 393.3 344 61.3
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 1.8e-107 393.3 358 60.3
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 1.2e-106 390.6 341 63.6
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 5.9e-106 388.3 343 61.5
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 1.0e-105 387.5 336 61.9
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 1.3e-105 387.1 343 61.8
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 3.8e-105 385.6 331 61.6
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 3.8e-105 385.6 347 61.4
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 8.5e-105 384.4 331 61.6
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 1.1e-104 384.0 347 60.2
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 1.1e-104 384.0 331 61.3
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 2.5e-104 382.9 325 64.3
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 3.2e-104 382.5 329 61.4
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 4.2e-104 382.1 334 62.9
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 4.2e-104 382.1 339 64.0
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 1.6e-103 380.2 338 61.2
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 1.0e-102 377.5 338 61.2
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 1.4e-102 377.1 351 59.5
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 3.0e-102 375.9 333 61.9
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 3.0e-102 375.9 328 62.8
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 6.8e-102 374.8 337 60.2
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 1.2e-101 374.0 338 62.1
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 1.5e-101 373.6 337 59.9
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 3.4e-101 372.5 328 62.5
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 4.4e-101 372.1 334 62.6
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 5.7e-101 371.7 331 62.8
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 7.5e-101 371.3 333 61.9
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 1.7e-100 370.2 340 59.7
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 2.8e-100 369.4 325 57.8
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 3.7e-100 369.0 333 61.0
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 4.8e-100 368.6 337 59.1
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 6.3e-100 368.2 335 60.3
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 8.3e-100 367.9 339 61.1
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 1.1e-99 367.5 341 59.8
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 1.1e-99 367.5 341 60.4
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 1.4e-99 367.1 326 62.9
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 7.0e-99 364.8 328 60.1
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 1.6e-98 363.6 339 59.3
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 2.0e-98 363.2 334 58.7
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 2.7e-98 362.8 334 57.5
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 2.7e-98 362.8 339 58.1
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 4.5e-98 362.1 339 57.8
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 4.5e-98 362.1 344 57.3
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 1.0e-97 360.9 338 58.0
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 1.0e-97 360.9 340 58.5
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 7.2e-96 354.8 325 55.7
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 2.1e-95 353.2 350 56.0
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 4.7e-95 352.1 336 57.1
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 4.7e-95 352.1 325 57.5
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 1.8e-94 350.1 318 59.7
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 3.0e-94 349.4 345 56.8
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 8.9e-94 347.8 341 58.1
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 8.9e-94 347.8 340 57.6
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.5e-93 347.1 344 54.7
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 3.4e-93 345.9 335 58.5
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 2.8e-92 342.8 345 56.2
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 2.8e-92 342.8 313 58.5
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 2.9e-89 332.8 329 55.9
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 5.0e-89 332.0 289 60.9
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 1.5e-88 330.5 382 51.3
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 5.6e-88 328.6 322 54.0
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 7.3e-88 328.2 331 55.0
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 9.5e-88 327.8 326 57.4
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 3.1e-86 322.8 345 53.0
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 4.0e-86 322.4 340 55.0
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 3.4e-85 319.3 293 55.6
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 5.8e-85 318.5 337 50.4
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 2.2e-84 316.6 340 52.4
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 1.1e-83 314.3 327 53.5
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 1.1e-83 314.3 337 51.3
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.9e-83 313.5 318 53.1
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 5.6e-80 302.0 391 47.1
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 7.3e-80 301.6 341 53.4
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 1.4e-78 297.4 317 53.9
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 2.3e-78 296.6 285 54.7
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 1.7e-76 290.4 276 55.1
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 2.9e-76 289.7 338 47.6
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 4.6e-74 282.3 272 54.8
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 5.4e-67 258.8 332 45.8
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 1.0e-65 254.6 338 45.9
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 1.5e-61 240.7 340 47.1
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 2.0e-61 240.4 235 49.4
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 5.4e-59 232.3 284 47.5
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 5.3e-54 215.7 223 50.2
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 7.6e-53 211.8 202 52.5
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 1.5e-48 197.6 281 43.1
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.4e-38 163.7 139 64.7
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 1.9e-35 154.1 270 39.3
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 2.8e-31 140.2 94 64.9
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 1.8e-30 137.5 281 30.2
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 1.1e-27 128.3 128 55.5
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 1.6e-26 124.4 291 28.9
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 3.7e-23 113.2 117 53.0
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 5.3e-22 109.4 104 53.8
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.4e-19 101.3 129 49.6
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-19 100.5 286 25.5
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 3.3e-16 90.1 73 54.8
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 2.7e-10 70.5 60 61.7
FAN28G2275 Fragaria x ananassa HOM05D000356 ORTHO05D000265 1.5e-08 64.7 71 54.9


User provided reference genes

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