Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 1.5e-189 666.0 339 100.0
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 3.5e-125 452.2 331 69.5
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 4.6e-125 451.8 297 73.7
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 5.6e-123 444.9 261 77.8
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 5.6e-123 444.9 261 77.8
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 2.8e-122 442.6 340 66.5
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 1.1e-121 440.7 317 69.1
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 1.8e-121 439.9 330 66.1
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 1.2e-120 437.2 294 71.8
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 3.7e-119 432.2 330 66.7
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 5.4e-118 428.3 297 69.7
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 3.5e-117 425.6 280 72.9
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 6.0e-117 424.9 257 76.7
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 5.0e-116 421.8 295 69.2
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.1e-115 420.6 298 67.8
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.5e-115 420.2 296 68.2
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 7.3e-115 417.9 293 67.2
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 1.6e-114 416.8 330 63.9
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 4.7e-114 415.2 280 71.8
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 8.1e-114 414.5 299 69.2
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 1.1e-113 414.1 300 65.7
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 2.3e-113 412.9 358 59.5
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 2.3e-113 412.9 278 70.5
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 3.1e-113 412.5 287 69.0
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.2e-112 410.6 306 64.4
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 2.0e-112 409.8 277 71.5
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 4.4e-112 408.7 288 68.8
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 7.5e-112 407.9 328 60.7
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 7.5e-112 407.9 297 65.7
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 1.3e-111 407.1 305 65.2
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 3.7e-111 405.6 260 73.5
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 6.4e-111 404.8 284 67.6
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 1.1e-110 404.1 293 67.2
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 2.4e-110 402.9 324 59.9
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 3.2e-110 402.5 282 67.7
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 3.2e-110 402.5 292 66.4
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 4.1e-110 402.1 324 59.6
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 1.6e-109 400.2 288 67.4
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 2.1e-109 399.8 298 63.8
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 3.5e-109 399.1 269 69.5
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 4.6e-109 398.7 272 69.9
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 7.8e-109 397.9 284 64.8
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 2.3e-108 396.4 333 59.8
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 3.9e-108 395.6 288 64.2
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 5.1e-108 395.2 292 62.3
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 8.6e-108 394.4 304 61.2
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 1.5e-107 393.7 298 63.4
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 1.5e-107 393.7 276 65.2
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 1.9e-107 393.3 275 65.1
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 1.9e-107 393.3 291 64.6
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 2.5e-107 392.9 286 64.0
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 2.5e-107 392.9 304 61.2
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 3.3e-107 392.5 261 69.0
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 7.3e-107 391.3 292 61.6
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 2.8e-106 389.4 292 61.3
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 8.1e-106 387.9 302 60.9
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 1.1e-105 387.5 295 61.4
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 1.4e-105 387.1 314 61.5
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 1.4e-105 387.1 304 61.5
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 1.4e-105 387.1 328 59.8
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 3.1e-105 386.0 270 64.8
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 3.1e-105 386.0 302 60.9
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 8.9e-105 384.4 270 63.7
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 2.6e-104 382.9 261 66.3
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 7.6e-104 381.3 275 63.6
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 1.3e-103 380.6 292 60.3
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 1.3e-103 380.6 262 69.5
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 1.7e-103 380.2 247 71.3
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 1.7e-103 380.2 334 58.7
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.7e-103 380.2 282 63.5
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 2.9e-103 379.4 265 65.3
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 2.9e-103 379.4 264 65.9
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 1.1e-102 377.5 290 61.4
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 5.4e-102 375.2 345 54.8
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 6.0e-101 371.7 349 55.3
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 6.6e-100 368.2 304 60.9
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 1.2e-98 364.0 245 68.6
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 2.8e-98 362.8 293 60.8
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 5.3e-97 358.6 302 58.3
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 6.9e-97 358.2 305 57.4
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 2.6e-96 356.3 328 55.8
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 3.4e-96 355.9 253 67.2
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 8.4e-95 351.3 248 68.1
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 1.1e-94 350.9 246 69.5
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 5.4e-94 348.6 301 57.8
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 1.6e-93 347.1 277 58.5
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 5.1e-92 342.0 284 58.1
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 1.8e-89 333.6 257 58.0
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 1.1e-86 324.3 264 56.8
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 2.4e-86 323.2 308 49.0
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 2.7e-85 319.7 210 67.6
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 4.6e-85 318.9 261 55.9
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.8e-84 317.0 208 69.2
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 3.9e-84 315.8 246 59.3
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 6.9e-81 305.1 266 54.1
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 9.9e-80 301.2 268 56.3
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 7.9e-77 291.6 178 74.7
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.2e-70 269.6 338 46.2
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 5.5e-70 268.9 225 60.4
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 5.7e-67 258.8 264 49.6
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 1.4e-54 217.6 136 71.3
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 2.3e-52 210.3 157 61.1
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 6.7e-52 208.8 188 59.6
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 8.8e-52 208.4 151 62.9
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 5.7e-51 205.7 150 66.0
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 2.0e-40 170.6 134 59.7
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 7.7e-40 168.7 112 67.9
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 8.0e-37 158.7 292 33.6
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 8.8e-36 155.2 159 51.6
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 1.0e-31 141.7 168 51.2
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.1e-30 138.3 85 74.1
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 1.7e-26 124.4 108 55.6
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 6.3e-26 122.5 116 55.2
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 4.5e-24 116.3 66 80.3
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 8.3e-18 95.5 203 28.1
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 1.1e-17 95.1 201 31.8
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 1.2e-16 91.7 204 27.0
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 2.0e-16 90.9 211 27.0
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 3.5e-16 90.1 209 26.3
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 5.9e-16 89.4 203 27.6
CiPaw.14G009200 Carya illinoinensis HOM05D005005 ORTHO05D006178 1.0e-15 88.6 203 27.1
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 1.0e-15 88.6 62 62.9
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.0e-15 88.6 204 25.5
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 1.7e-15 87.8 203 26.1
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 2.3e-15 87.4 203 26.6
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 2.9e-15 87.0 203 26.1
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 3.9e-15 86.7 224 25.9
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 5.0e-15 86.3 203 26.1
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 5.0e-15 86.3 203 26.6
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 6.6e-15 85.9 203 25.6
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 6.6e-15 85.9 203 26.1
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 6.6e-15 85.9 62 67.7
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 1.1e-14 85.1 203 26.6
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.1e-14 85.1 203 26.1
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 1.1e-14 85.1 203 25.6
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 1.1e-14 85.1 203 25.6
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 1.5e-14 84.7 203 24.6
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 1.9e-14 84.3 203 25.1
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 1.9e-14 84.3 203 25.1
Zm00001eb129080 Zea mays HOM05D005005 ORTHO05D006178 1.9e-14 84.3 203 26.1
SalBow6G1153 Salvia bowleyana HOM05D005005 ORTHO05D006178 3.3e-14 83.6 211 24.2
SalBow6G1292 Salvia bowleyana HOM05D005005 ORTHO05D006178 3.3e-14 83.6 211 24.2
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 4.3e-14 83.2 203 26.1
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 7.3e-14 82.4 203 25.1
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 9.5e-14 82.0 67 56.7
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 9.5e-14 82.0 203 24.6
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 1.6e-13 81.3 203 25.1
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 2.1e-13 80.9 206 24.3
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 2.1e-13 80.9 198 26.8
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.4e-12 78.2 202 27.7
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 6.8e-12 75.9 203 24.6
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 8.3e-10 68.9 43 72.1
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 2.3e-07 60.8 155 23.9
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 3.0e-07 60.5 45 57.8
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 1.5e-06 58.2 155 23.2


User provided reference genes

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