Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1444.5 714 100.0
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1187.2 714 80.5
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1184.9 715 81.1
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1179.9 714 79.1
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1178.7 714 80.0
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1172.1 714 80.4
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1167.9 714 79.3
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1161.4 699 80.1
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1161.0 714 79.7
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1160.2 714 78.9
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1160.2 714 78.2
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1158.7 714 78.9
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1157.1 710 80.1
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1155.2 710 79.0
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1154.8 714 78.3
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1153.7 716 78.9
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1149.0 714 78.0
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1144.4 707 78.8
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1142.1 713 79.0
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1140.2 714 77.5
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1139.0 714 79.1
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1138.6 714 79.0
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1132.9 714 77.3
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1132.5 714 78.4
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1132.1 707 77.8
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1127.9 714 77.5
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 0.0e+00 1124.4 707 77.5
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 0.0e+00 1124.4 706 77.5
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 0.0e+00 1122.1 706 78.2
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 0.0e+00 1120.9 717 77.0
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 0.0e+00 1117.8 706 77.9
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 0.0e+00 1115.5 710 76.9
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1112.1 714 75.5
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1107.0 714 75.6
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 0.0e+00 1105.1 801 69.8
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 0.0e+00 1104.7 707 76.1
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 0.0e+00 1104.0 706 76.8
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 0.0e+00 1101.3 701 76.7
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1099.7 708 76.8
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 0.0e+00 1099.0 713 74.1
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1098.2 714 74.9
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 0.0e+00 1098.2 714 74.9
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 0.0e+00 1096.6 714 74.1
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1096.6 716 74.2
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 0.0e+00 1094.7 708 75.6
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1093.6 710 73.5
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 0.0e+00 1092.0 708 75.6
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 0.0e+00 1088.2 716 72.8
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 0.0e+00 1087.8 715 73.8
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 0.0e+00 1082.8 716 73.5
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 0.0e+00 1080.5 714 73.9
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 0.0e+00 1079.7 748 71.5
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1079.7 714 73.1
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 0.0e+00 1078.9 715 73.3
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 0.0e+00 1078.5 715 74.4
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.5e-311 1072.4 708 74.0
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 5.9e-311 1070.5 714 73.5
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 1.4e-309 1065.8 707 75.0
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 3.1e-309 1064.7 707 73.1
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.6e-308 1061.6 729 74.1
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 1.7e-307 1058.9 720 72.6
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 2.9e-307 1058.1 715 73.0
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 5.0e-307 1057.4 707 74.4
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.9e-306 1055.4 732 71.2
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.0e-300 1035.4 736 69.7
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 8.5e-299 1030.0 705 71.2
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 1.1e-298 1029.6 709 71.8
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 2.7e-297 1025.0 706 71.4
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 1.0e-296 1023.1 707 71.7
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.8e-296 1022.3 716 70.5
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 3.0e-296 1021.5 708 71.3
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 1.2e-295 1019.6 708 71.2
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.2e-295 1019.6 669 73.5
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.5e-295 1019.2 708 71.0
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 8.3e-294 1013.4 709 71.1
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 3.1e-293 1011.5 714 70.0
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 4.1e-293 1011.1 707 71.0
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 2.7e-292 1008.4 708 70.3
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 2.5e-290 1001.9 709 70.8
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 2.5e-290 1001.9 714 69.5
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 4.0e-288 994.6 706 69.0
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 5.7e-287 990.7 686 69.8
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 1.6e-284 982.6 784 63.3
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 1.5e-282 976.1 707 67.9
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 1.4e-280 969.5 708 69.8
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 1.8e-280 969.1 767 63.0
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 5.8e-279 964.1 589 78.3
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 7.5e-279 963.8 695 66.2
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.7e-275 952.6 716 65.6
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 1.1e-272 943.3 562 80.1
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 3.4e-271 938.3 603 75.5
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 9.5e-266 920.2 714 64.6
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 1.2e-265 919.8 675 67.6
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 2.1e-265 919.1 723 64.9
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 9.9e-255 883.6 715 63.1
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 4.9e-254 881.3 718 60.9
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 3.6e-249 865.1 549 76.5
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 6.0e-236 821.2 526 76.2
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.9e-214 749.2 742 57.3
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 5.5e-213 745.0 694 53.2
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 9.4e-205 717.6 695 52.2
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 1.5e-189 667.2 697 49.9
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 6.8e-187 658.3 881 42.6
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 3.8e-182 642.5 448 69.4
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 1.4e-179 634.0 390 76.9
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 1.8e-176 623.6 844 42.5
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 3.2e-168 596.3 686 46.8
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 4.6e-159 565.8 490 57.1
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 1.1e-147 528.1 746 42.1
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 2.0e-138 497.3 735 41.0
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.7e-134 484.2 763 39.6
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 9.6e-133 478.4 699 39.3
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 2.7e-127 460.3 811 36.1
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 3.3e-125 453.4 336 70.2
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.6e-114 417.2 311 69.8
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.5e-109 400.6 365 58.4
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 4.0e-78 297.0 274 56.6
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.5e-72 278.5 201 67.7
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 5.4e-67 260.0 200 66.0
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 6.6e-57 226.5 132 82.6
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.4e-54 218.8 164 64.6
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 8.6e-41 172.9 113 76.1
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 1.1e-38 166.0 102 79.4
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 4.9e-36 157.1 174 53.4
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 6.0e-34 150.2 100 74.0
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 7.3e-32 143.3 113 64.6
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 8.9e-30 136.3 99 64.6
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.2e-21 109.4 148 43.9
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 3.4e-21 107.8 61 83.6
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 6.0e-18 97.1 62 71.0
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 2.8e-15 88.2 59 71.2
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.8e-14 85.5 45 86.7
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 2.2e-12 78.6 63 61.9
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 1.1e-08 66.2 48 54.2
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 9.6e-08 63.2 45 64.4


User provided reference genes

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