Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 0.0e+00 1117.4 672 100.0
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.3e-240 836.6 675 72.1
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 3.9e-237 825.1 677 72.8
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.8e-234 816.2 676 75.1
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 4.5e-233 811.6 677 72.8
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.9e-232 808.9 676 72.0
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.9e-232 808.9 673 69.2
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 7.2e-231 804.3 676 70.3
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 7.2e-231 804.3 675 76.4
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 7.2e-231 804.3 675 76.4
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-230 802.7 673 68.8
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-228 796.6 673 68.2
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.3e-228 795.0 673 68.2
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.4e-226 790.0 680 71.3
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.8e-226 789.6 673 67.9
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-226 789.3 673 69.4
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 6.9e-226 787.7 676 69.2
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 2.5e-223 779.2 677 71.8
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 5.5e-223 778.1 677 69.4
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 2.1e-222 776.2 676 68.8
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 3.0e-221 772.3 676 68.2
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 5.2e-221 771.5 677 68.4
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 6.7e-221 771.2 677 69.0
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 8.8e-221 770.8 675 69.0
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 9.7e-220 767.3 676 68.2
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.3e-219 766.9 677 67.7
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.7e-219 766.5 678 69.3
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 2.2e-219 766.1 680 68.2
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.8e-219 765.8 677 69.1
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.8e-219 765.8 677 66.6
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 6.3e-219 764.6 677 71.6
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 8.2e-219 764.2 677 68.8
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 8.2e-219 764.2 676 68.8
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 7.0e-218 761.1 677 68.8
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.6e-217 760.0 678 65.9
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 3.5e-217 758.8 678 68.4
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 7.7e-217 757.7 676 66.3
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 8.5e-216 754.2 679 67.7
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 2.5e-215 752.7 676 66.7
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 2.1e-214 749.6 677 69.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 4.7e-214 748.4 677 67.4
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.2e-208 729.6 675 65.5
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 5.0e-208 728.4 681 64.8
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.5e-207 726.9 676 67.9
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 3.2e-207 725.7 674 66.3
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 9.4e-207 724.2 673 64.3
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 1.0e-205 720.7 678 62.4
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.3e-205 719.5 655 65.5
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 2.3e-205 719.5 684 61.5
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 8.8e-205 717.6 682 62.3
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 5.4e-202 708.4 676 63.9
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.6e-201 706.8 680 65.3
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.3e-200 703.7 695 63.5
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 6.5e-200 701.4 673 63.4
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.5e-200 701.4 613 67.2
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 2.1e-198 696.4 673 63.3
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 3.7e-195 685.6 679 62.9
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.4e-194 683.7 673 63.6
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.4e-194 683.7 687 63.3
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.8e-194 683.3 677 63.1
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 2.4e-194 682.9 672 64.3
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 2.7e-193 679.5 673 63.2
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.7e-193 679.5 687 62.6
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 7.7e-193 677.9 673 59.0
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 3.8e-192 675.6 683 60.0
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 3.8e-192 675.6 676 64.6
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 2.8e-190 669.5 671 62.6
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.4e-189 667.2 682 63.9
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 3.0e-189 666.0 674 64.1
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 5.2e-189 665.2 675 60.7
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 6.8e-189 664.8 672 57.6
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 6.8e-189 664.8 677 59.7
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 2.0e-188 663.3 678 59.6
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 2.6e-188 662.9 686 61.2
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 5.7e-188 661.8 674 61.3
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 7.5e-188 661.4 674 61.1
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 4.9e-187 658.7 550 68.7
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 8.3e-187 657.9 632 60.8
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 8.3e-187 657.9 681 57.7
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.1e-186 657.5 675 59.1
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.1e-186 657.5 673 64.2
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.8e-186 656.8 674 60.2
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.8e-186 656.8 674 60.2
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 5.4e-186 655.2 672 63.2
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 9.2e-186 654.4 554 69.3
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 9.2e-186 654.4 554 69.3
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 2.0e-185 653.3 676 60.1
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.7e-185 652.9 676 58.6
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.3e-184 650.6 677 57.6
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 3.9e-184 649.0 684 57.3
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.1e-183 647.5 678 63.9
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.9e-183 646.7 678 59.9
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 4.3e-183 645.6 673 58.1
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 9.5e-183 644.4 684 60.1
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.6e-182 642.5 685 58.8
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 6.8e-181 638.3 676 60.9
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 6.8e-181 638.3 677 61.9
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.9e-181 637.9 677 58.3
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 2.6e-180 636.3 682 56.5
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.8e-180 634.4 681 56.5
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.3e-179 634.0 678 58.1
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 1.7e-179 633.6 681 62.4
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.9e-179 632.9 681 55.9
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-178 630.9 681 56.1
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 1.7e-176 623.6 676 59.8
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 2.3e-176 623.2 677 60.9
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.6e-174 617.1 676 60.2
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 2.8e-174 616.3 690 53.6
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.6e-172 609.8 687 55.3
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 3.7e-171 605.9 676 55.5
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 6.4e-171 605.1 677 56.4
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.1e-170 604.4 672 54.0
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.2e-169 600.9 677 58.1
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 3.9e-168 595.9 678 54.4
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 7.3e-167 591.7 677 56.6
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 1.6e-166 590.5 678 54.3
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.2e-166 588.6 679 53.2
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.1e-165 587.8 683 52.3
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 5.2e-165 585.5 675 53.2
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 2.6e-164 583.2 556 62.9
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 3.4e-164 582.8 682 59.5
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.3e-163 580.9 685 52.8
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 4.9e-163 578.9 685 51.2
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 8.4e-163 578.2 685 52.0
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.1e-162 577.8 669 54.9
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.1e-162 575.1 678 56.3
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 4.6e-161 572.4 695 54.7
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.1e-160 568.9 688 51.9
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.2e-158 564.3 687 49.9
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.7e-158 562.4 681 54.2
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.4e-157 560.1 669 56.4
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.2e-153 547.7 689 51.8
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 5.1e-152 542.3 674 52.7
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 9.6e-151 538.1 696 50.9
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.2e-150 535.4 671 51.4
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.4e-149 534.3 696 51.0
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 7.6e-148 528.5 686 48.8
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 4.2e-146 522.7 670 52.7
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 7.9e-145 518.5 690 51.2
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 3.0e-144 516.5 679 49.2
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 3.3e-143 513.1 530 58.7
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.2e-140 504.6 700 48.6
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 5.8e-140 502.3 697 47.6
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.3e-139 501.1 551 55.0
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.3e-139 501.1 626 50.5
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.9e-139 500.0 651 54.4
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.0e-136 490.0 675 48.1
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 3.2e-122 443.4 620 47.7
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 4.2e-122 443.0 412 64.3
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.3e-120 438.0 619 46.4
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.2e-116 424.9 416 68.0
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.0e-115 421.8 678 42.9
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 2.7e-113 413.7 413 63.9
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 6.5e-107 392.5 437 57.2
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 9.4e-98 362.1 674 41.1
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.3e-88 330.9 557 45.4
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 2.6e-87 327.4 547 43.1
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.3e-86 325.1 699 39.6
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.2e-81 308.5 321 57.3
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 6.1e-81 306.2 237 71.7
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 5.8e-71 273.1 523 40.3
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 7.0e-61 239.6 602 35.2
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 7.8e-60 236.1 641 35.3
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 2.3e-51 208.0 272 44.9
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 3.5e-36 157.5 112 68.8
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 2.4e-29 134.8 78 83.3
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.8e-27 128.6 162 51.2
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.7e-27 126.7 106 57.5
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.8e-24 118.6 89 67.4
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.7e-22 112.1 229 44.1
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.2e-20 105.9 78 70.5
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 4.6e-20 104.0 134 42.5
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.8e-17 94.7 74 63.5
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.8e-17 94.7 61 72.1
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 8.2e-17 93.2 279 28.0
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.9e-13 82.0 136 43.4
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 1.0e-11 76.3 60 63.3
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.8e-08 65.5 407 23.6
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.7e-06 58.9 81 51.9
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 2.9e-06 58.2 502 22.5


User provided reference genes

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