Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 2075.1 1067 100.0
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 2019.2 1073 97.2
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1690.2 1073 79.8
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1689.9 1074 79.8
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1682.5 997 84.1
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1679.1 1075 79.5
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1676.8 1074 79.6
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1670.6 1074 79.3
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1660.2 1076 78.8
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1650.2 1073 78.2
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1649.0 1116 76.9
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1648.6 1075 78.0
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1647.5 1073 78.3
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1644.0 1080 77.1
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1643.6 1073 78.0
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1637.1 1074 78.5
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1629.4 1075 78.0
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1628.6 1074 77.9
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1621.3 1075 77.9
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1620.9 1075 77.0
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1618.2 1073 76.1
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1616.7 1080 76.9
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1607.4 1067 76.2
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1604.3 1068 76.1
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1604.0 1086 75.3
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1592.4 1073 74.9
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1590.5 1093 75.5
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1589.3 1005 78.0
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1587.8 1072 76.6
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1587.4 1077 75.3
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1585.1 1067 75.1
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1583.2 1076 74.6
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1581.2 1072 74.3
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1580.8 1073 73.5
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1570.8 1072 73.8
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1570.1 1068 73.7
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1558.9 1086 73.1
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1558.1 1067 74.0
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1558.1 948 82.5
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1556.2 1077 73.1
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1555.0 1075 73.2
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1553.5 1081 74.6
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1553.5 1073 74.0
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1552.0 1073 75.2
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1550.8 1078 73.4
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1546.6 1070 72.9
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1540.0 1080 72.7
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1535.8 1067 72.8
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1531.9 1079 71.8
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1531.2 1086 71.8
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1527.3 1068 72.6
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1516.9 1146 69.0
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1516.5 1094 71.3
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1510.7 1068 72.3
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1508.8 1075 72.7
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1508.4 1068 72.2
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1504.2 1098 70.8
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1503.4 971 77.0
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1503.0 1073 72.0
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1502.6 1026 74.1
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1500.3 1074 72.1
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1491.1 998 75.3
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1485.3 947 78.4
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1483.4 1166 67.9
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1477.2 1074 70.6
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1467.6 965 76.4
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1465.7 1072 70.8
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1462.6 950 79.2
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1455.3 988 72.8
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1439.9 1221 63.4
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1427.5 1044 68.8
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1416.0 1019 69.0
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1410.2 1024 69.4
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1409.8 1095 68.3
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1408.3 978 73.4
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1379.4 868 80.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1351.3 978 68.5
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1297.3 882 75.1
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1289.2 1094 64.1
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1285.0 1194 59.8
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1276.9 1026 63.1
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1268.8 1008 62.1
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1267.3 1024 62.2
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1256.5 1119 60.5
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1228.4 966 67.3
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1138.3 1032 55.5
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1112.1 1134 54.6
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.7e-309 1065.4 656 80.5
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 6.1e-309 1064.3 1047 53.7
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 3.1e-297 1025.4 751 69.0
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 2.9e-295 1018.8 1099 53.6
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 1.9e-294 1016.1 1006 55.6
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 9.8e-291 1003.8 1021 52.7
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.3e-282 976.9 1034 49.9
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.2e-264 917.1 597 78.2
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.2e-259 900.6 618 73.6
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 7.1e-225 785.0 586 68.3
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 2.0e-219 766.9 501 77.4
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 7.4e-206 721.8 518 73.0
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 2.9e-202 709.9 470 76.6
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 8.0e-200 701.8 623 61.8
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 5.3e-196 689.1 813 52.2
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.9e-177 627.5 459 70.2
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 1.3e-170 604.7 410 73.4
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 3.6e-168 596.7 386 78.8
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 4.7e-168 596.3 397 75.6
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.1e-164 585.1 626 54.6
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 8.4e-149 532.3 357 76.5
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 5.4e-132 476.5 324 74.4
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.7e-130 471.5 314 78.3
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 1.7e-130 471.5 394 65.5
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 5.3e-127 459.9 339 72.0
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.8e-122 444.9 285 77.9
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.9e-116 424.9 814 38.3
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 7.4e-113 412.9 294 68.4
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 6.9e-103 379.8 199 87.9
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 7.9e-91 339.7 241 70.5
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 4.2e-84 317.4 299 50.5
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.3e-81 307.8 222 71.6
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 4.4e-57 227.6 174 72.4
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 2.9e-56 224.9 184 64.7
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 3.6e-51 208.0 142 71.8
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 2.0e-49 202.2 189 60.3
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 6.6e-45 187.2 150 62.7
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.0e-37 163.3 194 49.0
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 1.1e-34 153.3 105 71.4
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 1.4e-34 152.9 203 44.3
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 6.8e-34 150.6 125 57.6
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 6.8e-34 150.6 147 53.7
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 2.0e-33 149.1 128 60.9
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-31 143.3 112 62.5
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.9e-31 142.5 103 66.0
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 2.4e-31 142.1 93 77.4
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 5.1e-29 134.4 88 73.9
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 3.3e-28 131.7 90 68.9
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.6e-27 129.4 128 64.1
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.6e-27 129.4 128 64.1
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 2.8e-27 128.6 120 56.7
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 5.4e-23 114.4 111 59.5
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 6.6e-21 107.5 73 71.2
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 1.1e-20 106.7 192 37.0
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.4e-18 99.0 131 43.5
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.4e-16 90.9 69 68.1
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.4e-15 87.8 69 60.9
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 3.5e-14 85.1 109 48.6
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 2.5e-12 79.0 54 70.4
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 2.1e-11 75.9 55 65.5
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 1.2e-09 70.1 59 64.4
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 5.8e-09 67.8 44 72.7
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 5.8e-09 67.8 44 72.7
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 5.8e-09 67.8 44 72.7
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 9.9e-09 67.0 44 72.7
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 2.9e-08 65.5 43 72.1
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 3.8e-08 65.1 36 80.6
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 8.4e-08 63.9 44 68.2
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 3.2e-07 62.0 45 64.4
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 7.1e-07 60.8 55 56.4


User provided reference genes

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