Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 0.0e+00 1845.5 955 100.0
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 0.0e+00 1244.2 957 70.3
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 0.0e+00 1200.3 961 67.2
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 0.0e+00 1176.4 962 66.8
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 0.0e+00 1148.7 956 66.6
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 0.0e+00 1132.5 954 65.5
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 0.0e+00 1118.6 955 63.1
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 0.0e+00 1107.4 1010 62.2
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 0.0e+00 1106.7 1010 62.2
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 0.0e+00 1101.3 1010 62.1
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 0.0e+00 1095.5 1010 61.8
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 0.0e+00 1088.2 961 62.0
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 0.0e+00 1086.2 959 62.6
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 0.0e+00 1083.9 1033 60.6
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 6.5e-310 1067.4 954 61.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 3.2e-309 1065.1 964 61.7
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 1.0e-307 1060.1 958 61.8
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 3.0e-307 1058.5 854 68.0
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 3.9e-307 1058.1 957 60.7
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 6.7e-307 1057.4 968 61.2
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 6.7e-307 1057.4 961 61.7
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.5e-306 1055.4 957 60.8
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 5.7e-306 1054.3 1027 58.7
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.3e-305 1053.1 956 60.8
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.1e-305 1052.4 957 60.6
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 6.3e-305 1050.8 954 60.9
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 1.1e-304 1050.0 960 60.3
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 2.1e-300 1035.8 958 60.6
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 7.9e-300 1033.9 959 61.0
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 6.7e-299 1030.8 944 60.9
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 2.2e-297 1025.8 952 60.1
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.2e-292 1010.0 957 59.2
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 3.9e-291 1005.0 956 58.1
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 4.5e-287 991.5 825 65.9
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 6.1e-284 981.1 944 58.4
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 6.7e-283 977.6 959 57.1
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 4.8e-281 971.5 950 58.0
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.4e-280 969.1 956 56.9
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.6e-279 965.7 970 57.2
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 1.7e-278 963.0 953 57.6
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 2.1e-276 956.1 937 59.0
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 1.8e-275 953.0 1004 54.5
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.4e-272 943.3 835 63.2
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 6.5e-270 934.5 950 56.3
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 9.4e-269 930.6 962 56.3
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 3.0e-267 925.6 849 60.1
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.5e-266 923.3 962 55.8
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 4.8e-265 918.3 957 55.1
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.7e-263 912.5 955 55.5
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 4.2e-261 905.2 992 53.9
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 9.4e-261 904.0 775 63.6
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 2.7e-260 902.5 960 54.3
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 8.8e-259 897.5 1110 49.5
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.7e-254 883.2 966 55.2
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 2.3e-251 872.8 966 53.5
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 2.6e-250 869.4 994 50.8
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 3.4e-250 869.0 956 52.9
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 7.0e-248 861.3 991 51.5
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 5.0e-246 855.1 1008 51.7
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.4e-240 837.0 949 51.6
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 7.8e-239 831.2 953 53.5
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 1.7e-238 830.1 1000 49.9
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 8.6e-238 827.8 953 50.9
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 2.5e-237 826.2 774 59.4
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 9.5e-237 824.3 976 49.3
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.2e-234 817.4 976 50.2
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 2.6e-234 816.2 976 50.1
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 3.7e-233 812.4 970 49.7
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 9.2e-232 807.7 826 55.3
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 3.0e-230 802.7 940 49.7
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 4.7e-228 795.4 968 47.8
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.1e-227 794.3 953 49.6
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 9.2e-224 781.2 806 55.8
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.6e-223 780.4 1030 48.8
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 4.6e-223 778.9 954 48.8
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 3.6e-220 769.2 995 47.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 9.3e-216 754.6 945 47.1
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 6.9e-211 738.4 947 48.4
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.3e-209 734.2 952 44.9
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 2.4e-208 729.9 563 69.6
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 5.4e-208 728.8 1048 43.7
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.6e-204 717.2 913 49.0
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 8.1e-204 714.9 995 43.0
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.4e-200 704.1 956 47.3
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 3.3e-197 693.0 1003 43.3
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 7.4e-197 691.8 970 45.4
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 2.6e-194 683.3 1010 43.2
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 1.0e-193 681.4 967 44.6
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 1.3e-193 681.0 591 61.9
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 4.9e-193 679.1 954 44.5
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 7.1e-192 675.2 952 44.0
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 6.7e-190 668.7 943 44.1
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 3.3e-189 666.4 596 61.2
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 7.4e-189 665.2 941 46.1
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 9.0e-187 658.3 625 59.2
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 7.6e-186 655.2 952 44.3
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 5.0e-185 652.5 990 43.3
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 2.5e-181 640.2 946 44.2
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 1.6e-180 637.5 949 44.8
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 8.2e-180 635.2 943 43.7
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.1e-179 634.8 977 42.3
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.0e-177 628.2 949 42.7
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.3e-177 627.9 946 42.7
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.9e-176 624.0 937 42.9
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 4.2e-176 622.9 948 42.3
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 7.2e-176 622.1 945 43.0
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 2.1e-175 620.5 945 42.9
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.1e-175 620.5 945 42.6
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 8.8e-166 588.6 837 46.0
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.7e-162 575.5 695 50.4
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.3e-161 574.7 603 54.7
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 2.5e-152 543.9 938 37.8
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 5.5e-152 542.7 949 39.0
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 4.7e-143 513.1 532 56.4
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 1.4e-142 511.5 1012 36.2
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 3.4e-141 506.9 776 42.3
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.3e-140 505.0 783 41.3
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 1.8e-139 501.1 491 56.2
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 3.3e-136 490.3 383 68.1
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 5.2e-134 483.0 768 41.0
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 4.9e-132 476.5 786 39.7
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 2.4e-131 474.2 806 39.3
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.4e-131 474.2 554 49.3
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 9.2e-131 472.2 528 49.8
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.1e-126 458.8 1010 33.6
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 2.3e-126 457.6 413 62.5
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 6.8e-126 456.1 1001 33.8
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 3.2e-123 447.2 804 38.1
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 3.6e-111 407.1 552 44.0
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 7.6e-109 399.4 734 38.4
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 2.5e-104 384.4 334 60.5
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.4e-99 368.6 1022 31.8
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.2e-99 367.1 1064 28.5
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 3.5e-98 364.0 336 61.6
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 6.0e-98 363.2 621 41.5
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 5.4e-91 340.1 286 61.5
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 1.1e-86 325.9 253 66.4
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.9e-83 315.1 269 62.8
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 6.2e-79 300.1 484 42.4
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.0e-74 283.5 687 33.5
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.9e-73 280.8 240 62.9
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 2.2e-71 275.0 371 46.1
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 3.7e-71 274.2 370 45.9
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 9.1e-62 243.0 416 42.1
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.8e-54 218.8 186 65.1
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.2e-53 216.1 376 39.1
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 4.5e-53 214.2 347 42.4
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.4e-48 196.8 264 51.1
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 6.3e-47 193.7 229 50.7
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 1.3e-44 186.0 577 30.0
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.2e-44 185.3 340 39.7
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.1e-43 183.0 201 52.7
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.0e-41 176.4 184 54.3
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.4e-38 166.0 147 54.4
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 3.1e-38 164.9 226 46.9
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 9.1e-38 163.3 217 51.2
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.1e-35 156.4 171 48.0
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.6e-34 152.5 131 62.6
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 2.0e-29 135.6 191 45.0
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 2.0e-29 135.6 101 72.3
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 1.0e-25 123.2 171 43.9
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.0e-24 119.0 280 33.9
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 5.7e-24 117.5 95 61.1
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 3.7e-23 114.8 87 66.7
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 4.5e-21 107.8 83 67.5
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.3e-19 101.7 155 39.4
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 9.5e-19 100.1 137 40.1
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 3.0e-17 95.1 181 38.7
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 6.8e-17 94.0 187 34.2
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 8.9e-17 93.6 117 46.2
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 1.5e-16 92.8 96 47.9
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 9.2e-14 83.6 72 52.8
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 4.6e-13 81.3 113 40.7
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.1e-11 76.6 176 35.2
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 2.8e-10 72.0 85 40.0
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 8.9e-09 67.0 101 42.6
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 2.6e-08 65.5 134 38.1
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 4.4e-08 64.7 174 30.5
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 9.8e-08 63.5 173 30.1
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 3.7e-07 61.6 107 39.3
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 6.4e-07 60.8 184 31.5
HanXRQChr14g0429711 Helianthus annuus HOM05D003625 ORTHO05D004382 1.9e-06 59.3 73 45.2
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 3.2e-06 58.5 94 37.2


User provided reference genes

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