Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 2376.3 1201 100.0
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1880.5 1183 77.3
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1870.9 1183 77.2
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1870.5 1183 77.3
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1862.0 1183 76.8
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1857.4 1202 76.2
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1850.9 1170 77.7
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1846.6 1196 75.4
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1841.2 1201 75.1
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1831.6 1185 75.4
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1829.3 1182 76.1
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1806.2 1203 74.1
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1803.9 1185 74.3
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1791.2 1204 72.6
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1788.1 1186 73.3
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1778.5 1203 71.7
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1773.8 1183 73.1
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1773.4 1182 71.8
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1772.3 1182 71.7
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1767.7 1223 70.6
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1762.3 1183 72.9
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1751.9 1181 71.8
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1750.7 1182 70.8
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1750.3 1184 72.1
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1732.6 1184 71.7
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1727.6 1180 71.1
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1718.7 1180 69.9
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1718.4 1185 70.1
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1709.5 1203 70.0
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1707.6 1185 69.4
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1699.1 1183 70.0
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1697.9 1201 69.5
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1696.8 1183 70.8
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1691.4 1199 69.6
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1690.6 1183 70.5
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1687.5 1182 69.6
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1682.9 1184 69.3
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1680.6 1230 68.0
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1680.2 1183 69.7
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1679.8 1185 69.4
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1679.8 1183 69.9
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1678.3 1297 65.5
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1677.5 1178 69.4
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1672.9 1186 69.1
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1669.1 1184 68.6
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1665.2 1196 68.9
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1664.0 1180 68.6
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1662.1 1183 68.9
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1660.6 1180 68.0
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1659.0 1191 68.0
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1657.9 1189 68.7
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1657.5 1180 68.6
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1648.6 1182 68.4
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1647.5 1203 67.6
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1644.0 1180 67.6
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1639.8 1183 67.5
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1639.8 1190 67.6
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1637.1 1177 66.9
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1634.4 1181 67.0
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1631.7 1185 66.7
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1626.7 1182 66.9
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1626.7 1023 77.9
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1625.1 1207 67.4
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1623.2 1182 66.7
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1618.6 1181 67.0
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1615.5 1182 66.2
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1614.7 1202 66.2
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1612.4 1184 65.7
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1612.0 1181 66.8
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1607.8 1123 69.7
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1605.5 1191 66.1
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1604.0 1183 66.0
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1602.8 1195 65.4
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1601.6 1205 65.7
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1589.7 1200 65.1
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1589.3 1180 66.1
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1588.2 1254 63.2
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1583.5 1153 66.9
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1583.2 1180 66.1
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1575.5 1186 65.3
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1574.7 1180 65.7
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1572.0 1228 63.3
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1565.8 1187 64.4
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1561.2 1173 65.0
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1553.9 1164 65.1
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1553.1 1178 64.6
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1547.3 1181 65.2
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1537.3 1236 62.5
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1489.9 1179 62.2
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1486.5 1228 60.8
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1452.6 1285 58.3
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1430.6 1002 69.6
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1427.9 1199 59.5
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1424.8 1190 58.9
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1421.8 1176 59.6
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1402.9 969 71.3
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1368.2 1203 61.2
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1341.3 986 67.1
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1329.7 1187 58.6
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1288.9 1181 58.1
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1254.6 820 74.4
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1250.3 1206 55.8
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1215.7 1199 50.9
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1205.7 1186 51.6
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1189.1 858 70.0
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1184.1 1204 51.2
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1176.0 1183 49.0
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 5.8e-300 1034.6 711 71.6
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 6.0e-297 1024.6 769 65.4
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.1e-281 973.0 717 66.0
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 5.2e-264 915.2 1120 44.2
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 3.6e-241 839.3 1095 42.7
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 4.0e-232 809.3 1153 42.4
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 7.8e-228 795.0 584 67.3
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.8e-208 730.7 753 53.3
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.7e-203 714.1 472 71.4
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 3.6e-201 706.4 545 66.1
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.5e-191 674.5 488 68.2
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.8e-168 597.8 387 76.0
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 8.2e-153 545.8 589 51.4
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 4.4e-146 523.5 411 65.0
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 6.1e-132 476.5 716 39.7
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.6e-95 355.5 373 50.4
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 3.5e-95 354.4 259 65.3
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 2.2e-81 308.5 274 58.8
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 6.2e-68 263.8 179 72.1
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 3.7e-60 238.0 202 60.9
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.1e-59 236.5 288 44.8
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 6.7e-54 217.2 236 51.3
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 1.6e-52 212.6 296 41.9
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 1.4e-48 199.5 141 69.5
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 1.3e-33 149.8 166 50.0
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 8.2e-28 130.6 150 50.7
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 8.5e-17 94.0 72 61.1
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 3.6e-15 88.6 197 34.0
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 6.8e-14 84.3 59 71.2
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 1.3e-12 80.1 78 52.6
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 2.8e-12 79.0 320 22.8
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 2.7e-10 72.4 47 74.5
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 3.8e-09 68.6 94 43.6
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 2.5e-08 65.9 44 68.2
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 2.8e-07 62.4 52 55.8
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 8.0e-07 60.8 45 62.2
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 1.4e-06 60.1 86 40.7


User provided reference genes

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