Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0202 Cannabis sativa HOM05D000113 ORTHO05D008110 5.4e-62 240.7 115 100.0
CiPaw.07G108300 Carya illinoinensis HOM05D000113 ORTHO05D008110 2.8e-10 68.9 53 56.6
Ciclev10018660m.g Citrus clementina HOM05D000113 ORTHO05D008110 2.8e-10 68.9 54 55.6
Atru.chr5.1152 Acer truncatum HOM05D000113 ORTHO05D008110 4.8e-10 68.2 54 55.6
Prupe.8G260900 Prunus persica HOM05D000113 ORTHO05D008110 4.8e-10 68.2 54 53.7
RcHm_v2.0_Chr6g0293951 Rosa chinensis HOM05D000113 ORTHO05D008110 4.8e-10 68.2 56 51.8
TWI23G0215 Tripterygium wilfordii HOM05D000113 ORTHO05D008110 8.2e-10 67.4 56 53.6
Cfa005918 Carpinus fangiana HOM05D000113 ORTHO05D008110 1.4e-09 66.6 54 57.4
Haze_04932 Corylus avellana HOM05D000113 ORTHO05D008110 1.4e-09 66.6 54 57.4
Dinv19697 Davidia involucrata HOM05D000113 ORTHO05D008110 1.8e-09 66.2 54 55.6
QL12p028521 Quercus lobata HOM05D000113 ORTHO05D008110 1.8e-09 66.2 54 61.1
TAR636G2876 Trochodendron aralioides HOM05D000113 ORTHO05D008110 1.8e-09 66.2 54 53.7
MD03G1287700 Malus domestica HOM05D000113 ORTHO05D008110 2.4e-09 65.9 54 53.7
Rhsim01G0284800 Rhododendron simsii HOM05D000113 ORTHO05D008110 2.4e-09 65.9 57 50.9
Rhsim01G0284900 Rhododendron simsii HOM05D000113 ORTHO05D008110 2.4e-09 65.9 57 50.9
CSS0020045 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D008110 3.1e-09 65.5 56 48.2
Duzib138G1325 Durio zibethinus HOM05D000113 ORTHO05D008110 3.1e-09 65.5 53 52.8
Eucgr.K03481 Eucalyptus grandis HOM05D000113 ORTHO05D008110 3.1e-09 65.5 55 60.0
FAN15G1622 Fragaria x ananassa HOM05D000113 ORTHO05D008110 6.9e-09 64.3 54 48.1
Thecc.01G299800 Theobroma cacao HOM05D000113 ORTHO05D008110 6.9e-09 64.3 58 48.3
Potri.017G031800 Populus trichocarpa HOM05D000113 ORTHO05D008110 1.2e-08 63.5 56 48.2
vmacro15006 Vaccinium macrocarpon HOM05D000113 ORTHO05D008110 1.2e-08 63.5 54 50.0
Ah.08g213060 Amaranthus hybridus HOM05D000113 ORTHO05D008110 1.5e-08 63.2 55 52.7
Eucgr.K03477 Eucalyptus grandis HOM05D000113 ORTHO05D008110 1.5e-08 63.2 60 51.7
Eucgr.K03483 Eucalyptus grandis HOM05D000113 ORTHO05D008110 1.5e-08 63.2 53 56.6
TAR365G0742 Trochodendron aralioides HOM05D000113 ORTHO05D008110 1.5e-08 63.2 55 52.7
CSS0030253 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D008110 2.0e-08 62.8 56 46.4
AUR62008633 Chenopodium quinoa HOM05D000113 ORTHO05D008110 2.0e-08 62.8 55 54.5
Nn3g21480 Nelumbo nucifera HOM05D000113 ORTHO05D008110 2.0e-08 62.8 68 45.6
Sabra17G0020300 Salix brachista HOM05D000113 ORTHO05D008110 2.0e-08 62.8 56 50.0
FAN20G1487 Fragaria x ananassa HOM05D000113 ORTHO05D008110 2.6e-08 62.4 54 46.3
AUR62033138 Chenopodium quinoa HOM05D000113 ORTHO05D008110 3.4e-08 62.0 55 52.7
COL.COLO4_23351 Corchorus olitorius HOM05D000113 ORTHO05D008110 3.4e-08 62.0 53 50.9
DCAR_002827 Daucus carota HOM05D000113 ORTHO05D008110 5.9e-08 61.2 59 44.1
FvH4_2g25691 Fragaria vesca HOM05D000113 ORTHO05D008110 5.9e-08 61.2 54 46.3
FAN24G2368 Fragaria x ananassa HOM05D000113 ORTHO05D008110 5.9e-08 61.2 54 46.3
Gohir.A12G130600 Gossypium hirsutum HOM05D000113 ORTHO05D008110 5.9e-08 61.2 58 46.6
Gohir.D12G134400 Gossypium hirsutum HOM05D000113 ORTHO05D008110 5.9e-08 61.2 58 46.6
Gorai.008G145400 Gossypium raimondii HOM05D000113 ORTHO05D008110 5.9e-08 61.2 58 46.6
HanXRQChr04g0114511 Helianthus annuus HOM05D000113 ORTHO05D008110 1.0e-07 60.5 58 50.0
Eucgr.K03484 Eucalyptus grandis HOM05D000113 ORTHO05D008110 1.3e-07 60.1 41 65.9
BcaB02g08754 Brassica carinata HOM05D000113 ORTHO05D008110 1.7e-07 59.7 72 44.4
CARHR143070 Cardamine hirsuta HOM05D000113 ORTHO05D008110 1.7e-07 59.7 56 46.4
Eucgr.K03485 Eucalyptus grandis HOM05D000113 ORTHO05D008110 1.7e-07 59.7 52 55.8
Hund18149 Selenicereus undatus HOM05D000113 ORTHO05D008110 2.2e-07 59.3 66 45.5
AL4G47250 Arabidopsis lyrata HOM05D000113 ORTHO05D008110 2.9e-07 58.9 56 46.4
EL10Ac7g17516 Beta vulgaris HOM05D000113 ORTHO05D008110 2.9e-07 58.9 65 44.6
AT2G47680 Arabidopsis thaliana HOM05D000113 ORTHO05D008110 3.8e-07 58.5 56 46.4
A05p00280 Brassica napus HOM05D000113 ORTHO05D008110 8.5e-07 57.4 34 64.7
BraA05t19025Z Brassica rapa HOM05D000113 ORTHO05D008110 8.5e-07 57.4 34 64.7
Lj5g0009328 Lotus japonicus HOM05D000113 ORTHO05D008110 8.5e-07 57.4 52 51.9
Manes.01G218500 Manihot esculenta HOM05D000113 ORTHO05D008110 1.1e-06 57.0 56 48.2
GSVIVG01027995001 Vitis vinifera HOM05D000113 ORTHO05D008110 1.1e-06 57.0 65 41.5
BcaC02g12550 Brassica carinata HOM05D000113 ORTHO05D008110 1.4e-06 56.6 34 64.7
C04p00190 Brassica napus HOM05D000113 ORTHO05D008110 1.4e-06 56.6 34 64.7
BolC4t21666H Brassica oleracea HOM05D000113 ORTHO05D008110 1.4e-06 56.6 34 64.7
Carub.0004s3040 Capsella rubella HOM05D000113 ORTHO05D008110 1.4e-06 56.6 56 42.9
ECA236G2215 Erigeron canadensis HOM05D000113 ORTHO05D008110 1.4e-06 56.6 55 50.9
Sc24g0003800 Simmondsia chinensis HOM05D000113 ORTHO05D008110 1.4e-06 56.6 64 42.2
Actinidia24825 Actinidia chinensis HOM05D000113 ORTHO05D008110 1.9e-06 56.2 46 54.3
Lj2A1194T51 Lonicera japonica HOM05D000113 ORTHO05D008110 1.9e-06 56.2 53 45.3
CAN.G1989.5 Capsicum annuum HOM05D000113 ORTHO05D008110 2.5e-06 55.8 51 43.1
HanXRQChr06g0163801 Helianthus annuus HOM05D000113 ORTHO05D008110 3.2e-06 55.5 55 47.3
SalBow3G0505 Salvia bowleyana HOM05D000113 ORTHO05D008110 3.2e-06 55.5 59 45.8
BcaNung06419 Brassica carinata HOM05D000113 ORTHO05D008110 5.5e-06 54.7 46 52.2
PSO170G4966 Papaver somniferum HOM05D000113 ORTHO05D008110 7.2e-06 54.3 59 37.3


User provided reference genes

Program Settings