Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 3.1e-139 498.4 248 100.0
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 4.3e-133 478.0 248 97.2
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 6.6e-97 357.8 245 72.2
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 1.9e-96 356.3 227 74.0
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 5.5e-96 354.8 232 72.8
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 1.2e-95 353.6 229 72.9
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 1.6e-95 353.2 232 72.4
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 6.1e-95 351.3 225 75.1
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 1.0e-94 350.5 248 71.0
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 2.3e-94 349.4 229 72.1
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 5.2e-94 348.2 221 75.1
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 6.8e-94 347.8 233 71.2
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 8.9e-94 347.4 221 74.7
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 8.9e-94 347.4 224 75.4
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 8.9e-94 347.4 225 73.8
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.2e-93 347.1 231 71.9
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 1.2e-93 347.1 229 72.1
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 2.6e-93 345.9 224 74.1
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 3.4e-93 345.5 229 72.5
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 3.4e-93 345.5 230 70.9
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 3.4e-93 345.5 227 73.1
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 9.8e-93 344.0 250 68.8
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.3e-92 343.6 231 71.4
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 1.7e-92 343.2 241 70.5
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 2.2e-92 342.8 227 72.7
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 1.4e-91 340.1 227 70.9
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 1.8e-91 339.7 222 73.0
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 2.4e-91 339.3 222 73.0
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 3.1e-91 339.0 221 72.9
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 2.7e-90 335.9 224 71.0
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 2.7e-90 335.9 228 69.7
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 4.5e-90 335.1 235 71.5
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 2.3e-89 332.8 231 70.1
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 3.8e-89 332.0 232 68.5
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 3.8e-89 332.0 224 71.4
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 5.0e-89 331.6 228 68.4
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 2.5e-88 329.3 234 67.9
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 3.3e-88 328.9 228 69.7
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 4.3e-88 328.6 228 68.9
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 5.6e-88 328.2 228 69.7
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 5.6e-88 328.2 224 70.1
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 7.3e-88 327.8 225 70.2
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.2e-87 327.0 228 69.3
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 2.8e-87 325.9 224 69.6
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 3.6e-87 325.5 225 68.9
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 4.7e-87 325.1 233 65.7
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 1.0e-86 323.9 225 68.4
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 1.4e-86 323.6 233 66.1
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 1.4e-86 323.6 233 66.1
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 1.8e-86 323.2 228 67.5
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 3.1e-86 322.4 226 67.3
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 4.0e-86 322.0 233 64.8
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 5.2e-86 321.6 221 71.0
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 6.8e-86 321.2 224 69.2
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 8.9e-86 320.9 233 67.0
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 8.3e-84 314.3 224 64.7
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 1.1e-83 313.9 224 64.7
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 1.9e-83 313.2 227 66.1
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.2e-82 310.5 236 66.5
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 1.6e-82 310.1 224 65.2
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 2.0e-82 309.7 226 65.5
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 2.0e-82 309.7 224 63.8
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 2.7e-82 309.3 237 62.9
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 4.6e-82 308.5 237 62.0
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 1.0e-81 307.4 212 70.3
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 2.3e-81 306.2 225 64.9
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 3.0e-81 305.8 243 62.1
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 3.0e-81 305.8 237 63.3
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 8.6e-81 304.3 221 66.1
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 1.1e-80 303.9 277 57.0
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 1.9e-80 303.1 224 64.3
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 3.3e-80 302.4 234 62.8
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 4.3e-80 302.0 248 64.1
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 7.3e-80 301.2 234 62.4
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 9.5e-80 300.8 230 65.2
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 8.0e-79 297.7 224 64.3
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 1.1e-78 297.4 229 65.1
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.1e-78 297.4 260 60.0
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 2.0e-77 293.1 235 64.3
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 2.6e-77 292.7 210 66.7
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 9.8e-77 290.8 222 65.8
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 1.3e-76 290.4 228 64.0
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 1.4e-75 287.0 219 63.9
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 2.1e-74 283.1 219 60.3
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 2.1e-74 283.1 219 60.7
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 7.8e-74 281.2 224 59.8
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 6.6e-73 278.1 250 56.8
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 1.1e-72 277.3 199 67.8
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 1.2e-71 273.9 212 64.2
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 1.8e-70 270.0 194 66.0
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 3.1e-70 269.2 185 65.9
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 9.9e-69 264.2 206 62.1
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 9.9e-69 264.2 206 62.1
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 4.1e-67 258.8 210 61.0
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 1.2e-66 257.3 201 62.2
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 1.5e-64 250.4 199 60.3
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 2.8e-63 246.1 219 59.8
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 4.7e-63 245.4 239 54.8
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.8e-62 243.4 219 59.4
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 2.4e-62 243.0 261 51.3
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 1.1e-59 234.2 183 60.7
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 1.9e-59 233.4 287 48.4
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.0e-57 227.6 146 72.6
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 2.3e-57 226.5 159 69.8
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 3.4e-53 212.6 228 53.5
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 4.4e-53 212.2 163 61.3
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 7.6e-53 211.5 218 53.7
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 4.2e-51 205.7 135 70.4
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 2.5e-48 196.4 165 63.0
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 5.6e-48 195.3 121 76.9
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 1.1e-43 181.0 135 68.1
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 3.2e-43 179.5 123 70.7
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 4.2e-43 179.1 168 56.0
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 1.3e-36 157.5 152 53.9
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 9.3e-35 151.4 131 57.3
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 2.7e-34 149.8 219 37.9
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 2.9e-28 129.8 213 32.9
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 3.7e-23 112.8 106 50.9
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 6.3e-23 112.1 79 65.8
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 7.4e-16 88.6 65 58.5
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 2.5e-11 73.6 89 43.8
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 3.0e-09 66.6 43 69.8


User provided reference genes

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