Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 3.9e-187 659.1 707 100.0
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 4.9e-105 386.3 411 70.6
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 1.2e-100 371.7 434 60.4
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.4e-99 368.2 217 89.4
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 9.0e-99 365.5 230 86.5
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 3.4e-98 363.6 305 76.4
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.2e-97 360.9 214 87.9
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 2.9e-97 360.5 378 72.0
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 4.9e-97 359.8 212 88.2
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 4.9e-97 359.8 217 86.2
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 4.9e-97 359.8 427 65.3
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 4.9e-97 359.8 343 66.2
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.9e-96 357.8 385 63.9
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 5.4e-96 356.3 265 79.2
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 5.4e-96 356.3 221 84.2
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 9.3e-96 355.5 266 77.4
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 9.3e-96 355.5 417 67.6
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.7e-95 354.0 225 83.1
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 3.5e-95 353.6 215 86.0
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 4.6e-95 353.2 214 86.4
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 6.0e-95 352.8 391 62.4
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 6.0e-95 352.8 270 81.9
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 7.8e-95 352.4 220 83.6
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 7.8e-95 352.4 384 73.2
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 7.8e-95 352.4 209 89.0
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 2.3e-94 350.9 222 82.9
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 3.9e-94 350.1 210 87.6
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 5.1e-94 349.7 220 81.8
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 8.7e-94 349.0 220 83.2
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 8.7e-94 349.0 220 83.2
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 8.7e-94 349.0 222 82.4
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.5e-93 348.2 219 83.1
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 2.5e-93 347.4 376 72.3
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 3.3e-93 347.1 379 70.2
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 3.3e-93 347.1 372 65.9
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 4.3e-93 346.7 216 84.3
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 4.3e-93 346.7 370 65.7
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 4.3e-93 346.7 212 85.4
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 4.3e-93 346.7 213 85.0
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 4.3e-93 346.7 209 85.6
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 4.3e-93 346.7 312 78.8
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 5.6e-93 346.3 366 66.7
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 5.6e-93 346.3 268 78.4
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 7.3e-93 345.9 216 84.3
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.6e-92 344.7 302 69.9
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 2.1e-92 344.4 218 82.6
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 2.1e-92 344.4 214 85.5
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 2.8e-92 344.0 207 88.4
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 8.1e-92 342.4 208 83.7
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.1e-91 342.0 220 83.2
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-91 342.0 224 79.9
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.1e-91 342.0 412 65.8
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.4e-91 341.7 224 79.9
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 2.4e-91 340.9 375 64.3
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.4e-91 340.9 273 79.9
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.1e-91 340.5 209 83.3
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 4.0e-91 340.1 214 84.6
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 4.0e-91 340.1 215 82.3
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 5.3e-91 339.7 218 83.5
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 5.3e-91 339.7 210 86.2
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 6.9e-91 339.3 211 83.4
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 9.0e-91 339.0 220 82.7
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 9.0e-91 339.0 220 82.7
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 2.6e-90 337.4 367 63.5
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 3.4e-90 337.0 427 58.8
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.4e-90 337.0 420 68.3
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 5.8e-90 336.3 214 82.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 7.6e-90 335.9 266 77.4
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.3e-89 335.1 301 73.4
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.7e-89 334.7 218 81.7
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 2.9e-89 334.0 212 82.5
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.9e-89 334.0 444 60.1
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 2.9e-89 334.0 280 77.9
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 4.9e-89 333.2 425 66.1
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.1e-88 332.0 209 82.8
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 1.9e-88 331.3 422 66.1
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 2.4e-88 330.9 213 81.2
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 7.1e-88 329.3 215 80.0
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.3e-88 328.9 418 64.4
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 9.6e-85 318.9 222 75.2
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 6.2e-84 316.2 202 81.7
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 1.1e-83 315.5 196 84.2
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.1e-83 315.5 252 70.2
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 2.4e-83 314.3 195 82.1
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 6.9e-83 312.8 209 78.9
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 9.0e-83 312.4 209 78.9
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.6e-82 310.8 221 72.9
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 6.4e-81 306.2 191 84.3
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 8.4e-81 305.8 219 73.5
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 3.2e-80 303.9 223 70.4
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 2.1e-79 301.2 408 57.1
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.0e-78 298.9 203 78.8
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 6.7e-78 296.2 190 80.5
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 4.0e-75 287.0 387 64.6
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 5.3e-75 286.6 184 79.9
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.7e-73 281.6 218 66.5
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 3.2e-72 277.3 225 69.8
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.1e-69 268.9 211 64.9
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.3e-69 267.3 190 71.6
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 2.2e-68 264.6 208 66.3
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.8e-67 261.5 211 65.4
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 9.0e-67 259.2 201 70.1
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 4.2e-64 250.4 164 81.7
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 8.8e-62 242.7 188 70.7
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 7.4e-61 239.6 162 79.6
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.1e-59 235.7 171 73.7
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 7.4e-53 213.0 195 60.5
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.6e-42 178.7 156 59.0
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 9.4e-32 142.9 94 77.7
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 8.8e-30 136.3 103 75.7
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 1.5e-29 135.6 115 57.4
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.3e-25 122.5 189 41.3
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 1.1e-24 119.4 79 75.9
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 7.2e-24 116.7 207 36.7
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 9.5e-24 116.3 82 76.8
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 2.3e-22 111.7 64 90.6
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 8.9e-22 109.8 75 74.7
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 3.4e-21 107.8 63 82.5
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 2.0e-18 98.6 75 68.0
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 5.9e-18 97.1 56 85.7
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.3e-17 95.9 63 76.2
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 2.3e-17 95.1 180 37.2
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.9e-17 94.7 107 48.6
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.5e-16 92.4 56 78.6
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 9.5e-16 89.7 63 71.4
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 1.0e-14 86.3 95 47.4
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.4e-14 85.9 168 35.1
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 2.0e-13 82.0 186 30.6
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 9.8e-13 79.7 52 73.1
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.1e-11 76.3 159 35.2
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 1.5e-08 65.9 71 54.9
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 3.6e-07 61.2 35 80.0
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.8e-06 58.9 36 75.0
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 4.0e-06 57.8 155 27.7
A03p12170 Brassica napus HOM05D022734 ORTHO05D024517 8.9e-06 56.6 40 72.5


User provided reference genes

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