Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 1.9e-147 525.8 260 100.0
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 1.1e-134 483.4 259 93.8
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 1.4e-134 483.0 258 94.2
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 3.2e-134 481.9 261 93.9
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 9.2e-134 480.3 261 93.5
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 5.9e-133 477.6 261 91.6
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 5.9e-133 477.6 260 92.7
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 1.3e-132 476.5 253 94.5
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 2.3e-132 475.7 253 94.1
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 1.9e-131 472.6 257 92.6
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 1.9e-131 472.6 257 92.6
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 2.8e-130 468.8 260 90.8
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-127 459.9 249 94.4
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-127 459.9 249 94.4
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-127 459.9 249 94.4
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-127 459.9 249 94.4
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-127 459.9 249 94.4
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 2.2e-127 459.1 243 94.7
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 4.9e-127 458.0 249 94.0
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 6.4e-127 457.6 253 92.5
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.6e-125 453.0 242 93.8
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 2.7e-125 452.2 248 92.3
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 1.5e-123 446.4 252 90.1
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 9.5e-123 443.7 237 94.5
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 9.5e-123 443.7 237 94.5
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-122 440.7 235 94.5
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-122 440.7 235 94.5
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 1.4e-121 439.9 244 87.3
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 1.8e-121 439.5 233 94.4
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.2e-120 436.8 235 93.2
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 1.2e-120 436.8 233 92.7
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-120 436.4 235 94.0
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 1.5e-120 436.4 233 92.7
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 1.5e-120 436.4 233 92.7
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 1.5e-120 436.4 233 92.7
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 1.5e-120 436.4 233 92.7
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 1.5e-120 436.4 233 92.7
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 1.5e-120 436.4 233 92.7
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 2.0e-120 436.0 232 93.1
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 9.8e-120 433.7 234 92.7
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 7.8e-117 424.1 228 91.2
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 1.3e-116 423.3 253 82.6
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 1.1e-115 420.2 253 87.7
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 3.3e-115 418.7 240 84.2
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.1e-113 413.7 290 75.2
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.1e-113 413.7 290 75.2
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 2.0e-112 409.5 221 93.7
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 2.6e-112 409.1 260 82.3
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 1.3e-111 406.8 286 75.5
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 7.8e-109 397.5 215 91.6
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 3.9e-108 395.2 206 93.2
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 8.6e-108 394.0 287 74.9
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 2.4e-102 375.9 204 92.2
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 9.9e-96 354.0 192 94.3
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 7.9e-93 344.4 181 93.4
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 5.1e-92 341.7 191 91.6
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 4.3e-91 338.6 208 85.1
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 5.1e-84 315.1 170 94.1
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 3.0e-76 289.3 160 91.9
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 7.6e-72 274.6 196 75.0
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 7.6e-72 274.6 196 75.0
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 1.9e-67 260.0 154 83.8
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 4.5e-64 248.8 154 84.4
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 5.5e-62 241.9 127 92.1
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.2e-61 240.7 126 94.4
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.8e-60 236.9 126 92.9
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 2.0e-59 233.4 126 92.9
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.3e-59 232.6 126 91.3
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 5.7e-59 231.9 126 92.1
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.7e-59 231.9 126 91.3
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.7e-59 231.9 126 91.3
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.7e-59 231.9 126 91.3
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.7e-59 231.9 126 91.3
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.7e-59 231.9 126 91.3
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 9.7e-59 231.1 189 67.7
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 1.3e-58 230.7 127 89.0
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 2.6e-56 223.0 126 88.9
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 5.5e-54 215.3 137 82.5
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 1.2e-53 214.2 123 87.8
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 2.7e-53 213.0 120 87.5
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.8e-49 200.3 139 68.3
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 5.3e-49 198.7 114 86.8
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 1.6e-48 197.2 111 88.3
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 4.5e-48 195.7 132 77.3
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 1.7e-47 193.7 110 89.1
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 7.2e-46 188.3 114 83.3
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 6.1e-45 185.3 105 86.7
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 1.4e-44 184.1 115 80.9
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 2.3e-44 183.3 103 88.3
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 3.7e-42 176.0 103 86.4
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 3.7e-42 176.0 103 86.4
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 3.7e-42 176.0 103 86.4
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 1.1e-41 174.5 104 84.6
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.8e-41 173.7 91 92.3
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.8e-41 173.7 91 92.3
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 7.0e-41 171.8 94 92.6
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 7.0e-41 171.8 94 92.6
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 2.7e-40 169.9 117 70.1
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 3.5e-40 169.5 155 59.4
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 1.7e-39 167.2 85 95.3
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.9e-39 166.4 93 87.1
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 8.5e-39 164.9 106 83.0
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 1.5e-38 164.1 105 79.0
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 3.4e-35 152.9 91 80.2
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 4.4e-35 152.5 98 78.6
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.3e-34 151.0 84 88.1
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 3.1e-33 146.4 85 84.7
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.3e-31 141.0 74 90.5
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 3.8e-31 139.4 103 68.0
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 1.5e-30 137.5 84 85.7
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 3.3e-30 136.3 105 61.0
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 4.2e-30 136.0 74 89.2
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 9.5e-30 134.8 128 47.7
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.1e-29 133.7 120 62.5
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 8.0e-29 131.7 82 81.7
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 1.0e-28 131.3 74 85.1
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.0e-28 131.3 90 74.4
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 1.8e-28 130.6 72 93.1
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 4.0e-28 129.4 201 40.3
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 8.9e-28 128.3 94 71.3
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 7.5e-27 125.2 126 56.3
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 7.5e-27 125.2 76 78.9
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 9.8e-27 124.8 67 88.1
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 1.2e-24 117.9 61 91.8
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 1.6e-24 117.5 64 85.9
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.7e-23 114.0 121 54.5
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 3.8e-23 112.8 80 62.5
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 1.9e-22 110.5 59 94.9
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.3e-22 109.4 94 62.8
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 2.1e-21 107.1 103 54.4
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 3.4e-19 99.8 56 80.4
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 4.4e-19 99.4 58 81.0
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.8e-19 99.0 126 50.8
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.2e-18 97.1 70 70.0
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 8.3e-18 95.1 54 87.0
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 8.3e-18 95.1 46 93.5
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.4e-17 94.4 59 83.1
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 9.2e-17 91.7 54 83.3
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 9.2e-17 91.7 44 93.2
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 9.2e-17 91.7 44 93.2
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.7e-16 90.1 52 88.5
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 1.3e-15 87.8 46 89.1
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 1.3e-15 87.8 74 64.9
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 3.0e-15 86.7 110 48.2
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 1.9e-14 84.0 58 75.9
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 3.3e-14 83.2 97 50.5
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 1.4e-12 77.8 48 85.4
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 5.2e-12 75.9 48 75.0
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 2.0e-11 73.9 44 79.5
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.0e-11 73.9 65 61.5
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 1.9e-09 67.4 52 73.1
SHI08953 Sapria himalayana HOM05D004291 ORTHO05D005620 3.2e-09 66.6 156 32.7
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 2.7e-08 63.5 49 63.3
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 7.8e-08 62.0 49 61.2
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 1.7e-07 60.8 49 65.3
Sc08g0004800 Simmondsia chinensis HOM05D004291 ORTHO05D005620 1.7e-07 60.8 47 66.0
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 3.0e-07 60.1 65 52.3
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 8.6e-07 58.5 41 70.7
Nitab4.5_0000216g0120 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.9e-06 57.4 29 89.7
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 4.3e-06 56.2 56 53.6


User provided reference genes

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