Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 9.3e-141 503.4 239 100.0
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 3.6e-84 315.5 228 62.3
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 8.0e-84 314.3 224 62.9
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 1.0e-83 313.9 228 64.0
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 3.0e-83 312.4 220 62.7
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 5.2e-83 311.6 226 63.7
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 6.8e-83 311.2 228 63.6
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 8.9e-83 310.8 224 65.6
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.6e-82 309.3 224 64.7
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.6e-82 309.3 224 64.7
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.4e-82 308.9 226 62.4
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 3.4e-82 308.9 226 63.3
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 9.8e-82 307.4 231 61.0
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 1.3e-81 307.0 229 62.0
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 1.3e-81 307.0 227 60.8
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.7e-81 306.6 220 65.9
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 2.8e-81 305.8 220 65.0
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 3.7e-81 305.4 226 61.5
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 4.9e-81 305.1 225 63.1
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 6.3e-81 304.7 229 62.4
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 8.3e-81 304.3 234 58.1
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 1.8e-80 303.1 224 60.7
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 1.8e-80 303.1 227 61.7
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 2.4e-80 302.8 231 60.6
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 3.1e-80 302.4 226 63.3
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 5.4e-80 301.6 233 61.4
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 5.4e-80 301.6 234 58.1
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 1.2e-79 300.4 223 62.8
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 1.6e-79 300.1 236 58.5
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 1.6e-79 300.1 236 59.3
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.6e-79 300.1 234 57.7
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 2.0e-79 299.7 224 61.2
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 2.0e-79 299.7 228 61.4
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 3.5e-79 298.9 231 60.2
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 3.5e-79 298.9 231 60.2
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 3.5e-79 298.9 231 60.2
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 5.9e-79 298.1 231 57.6
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 7.8e-79 297.7 213 62.4
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 7.8e-79 297.7 226 61.1
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 1.7e-78 296.6 224 57.6
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 2.9e-78 295.8 228 60.1
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 5.0e-78 295.0 238 58.0
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 5.0e-78 295.0 225 60.0
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 6.6e-78 294.7 236 59.3
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 6.6e-78 294.7 221 63.3
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 8.6e-78 294.3 220 59.5
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 1.1e-77 293.9 228 59.2
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 2.5e-77 292.7 224 59.4
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 2.5e-77 292.7 224 60.3
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 3.3e-77 292.4 230 60.4
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 3.3e-77 292.4 220 60.0
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 4.3e-77 292.0 226 59.7
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 4.3e-77 292.0 220 61.4
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 4.3e-77 292.0 215 62.3
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 4.3e-77 292.0 225 60.4
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 4.3e-77 292.0 229 59.8
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 5.6e-77 291.6 221 61.5
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 5.6e-77 291.6 218 59.6
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 9.5e-77 290.8 230 60.0
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 9.5e-77 290.8 228 58.8
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 9.5e-77 290.8 225 59.6
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.2e-76 290.4 228 59.6
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.2e-76 290.4 227 59.9
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 1.6e-76 290.0 230 60.0
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.6e-76 290.0 222 60.8
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 2.1e-76 289.7 230 59.6
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 2.1e-76 289.7 232 59.5
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 2.1e-76 289.7 222 59.5
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 6.1e-76 288.1 230 57.8
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 6.1e-76 288.1 242 55.8
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 8.0e-76 287.7 221 61.1
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 1.0e-75 287.3 224 57.6
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.4e-75 287.0 230 58.3
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 8.9e-75 284.3 227 58.6
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.2e-74 283.9 227 58.6
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 1.2e-74 283.9 235 57.4
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 2.0e-74 283.1 217 60.4
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 2.0e-74 283.1 221 58.4
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 4.4e-74 282.0 226 58.8
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 4.4e-74 282.0 226 58.8
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 4.4e-74 282.0 226 58.8
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.4e-74 282.0 220 57.3
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 5.8e-74 281.6 224 56.7
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 9.8e-74 280.8 232 56.9
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 1.7e-73 280.0 233 54.5
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.7e-73 280.0 221 58.4
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 2.9e-73 279.3 213 60.6
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 2.9e-73 279.3 225 58.7
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 6.4e-73 278.1 227 57.7
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.8e-72 276.6 221 57.9
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.8e-72 276.6 233 54.9
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 7.0e-72 274.6 218 58.3
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 7.0e-72 274.6 240 55.4
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.0e-71 273.1 223 57.8
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.0e-71 273.1 232 53.0
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 7.8e-71 271.2 228 54.8
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 7.8e-71 271.2 217 57.6
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 7.8e-71 271.2 234 53.4
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 7.8e-71 271.2 239 51.0
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 1.0e-70 270.8 227 57.7
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.0e-70 270.8 223 55.6
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 1.3e-70 270.4 225 57.3
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 1.3e-70 270.4 234 53.0
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.7e-70 270.0 214 57.0
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 1.7e-70 270.0 187 64.7
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 3.0e-70 269.2 207 59.9
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.5e-69 266.9 235 53.6
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 1.5e-69 266.9 232 51.7
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 3.3e-69 265.8 234 53.8
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 9.5e-69 264.2 231 54.5
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.1e-68 263.1 226 53.5
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 4.7e-68 261.9 231 52.8
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 6.2e-68 261.5 227 54.6
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 8.0e-68 261.2 221 53.4
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.1e-67 260.8 227 55.1
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.4e-67 260.4 223 55.2
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 1.8e-67 260.0 227 54.6
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 1.8e-67 260.0 237 53.6
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 4.0e-67 258.8 227 53.7
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 5.2e-67 258.5 220 54.5
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 2.6e-66 256.1 231 54.1
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 7.5e-66 254.6 227 52.9
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 7.5e-66 254.6 235 51.1
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 9.8e-66 254.2 227 54.6
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 9.8e-66 254.2 227 54.6
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 9.8e-66 254.2 227 54.6
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 9.8e-66 254.2 218 54.1
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 1.3e-65 253.8 201 60.7
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 1.7e-65 253.4 227 52.4
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.7e-65 253.4 226 51.8
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.2e-65 253.1 227 51.5
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 2.9e-65 252.7 227 54.6
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 1.4e-64 250.4 227 53.7
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 3.2e-64 249.2 222 53.6
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 7.0e-64 248.1 227 50.7
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 2.7e-63 246.1 227 50.7
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.7e-63 246.1 229 54.1
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 1.0e-62 244.2 232 46.1
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 9.9e-58 227.6 224 46.0
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 2.2e-57 226.5 179 59.2
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 3.7e-57 225.7 220 47.7
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 6.4e-57 224.9 220 47.7
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 8.3e-57 224.6 221 47.5
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 1.4e-56 223.8 203 54.2
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.7e-55 219.5 233 48.1
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 3.5e-55 219.2 167 61.1
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.7e-54 216.9 225 44.9
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 4.3e-53 212.2 225 45.8
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 1.2e-52 210.7 219 45.7
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 4.7e-52 208.8 228 44.3
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 6.2e-52 208.4 146 62.3
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.2e-50 204.1 222 45.0
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 1.5e-50 203.8 225 44.0
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.6e-50 203.0 221 45.2
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 2.4e-48 196.4 220 43.2
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 2.1e-47 193.4 233 40.8
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 6.6e-46 188.3 239 43.5
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 1.6e-44 183.7 177 47.5
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 6.2e-44 181.8 172 50.0
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.8e-43 180.3 218 41.7
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 2.4e-43 179.9 223 41.3
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.1e-43 179.5 120 64.2
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 3.1e-43 179.5 208 46.2
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 5.2e-43 178.7 219 43.8
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 2.9e-41 172.9 149 52.3
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 8.4e-41 171.4 146 52.7
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 5.4e-40 168.7 314 33.1
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 5.4e-40 168.7 177 46.9
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 2.7e-39 166.4 134 57.5
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.3e-38 163.3 108 64.8
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 2.4e-35 153.3 212 36.8
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.3e-22 110.2 88 47.7
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 3.3e-21 106.3 94 48.9
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 6.2e-20 102.1 88 61.4
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 1.6e-12 77.4 60 55.0
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 6.9e-11 72.0 79 46.8
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 3.2e-08 63.2 50 54.0


User provided reference genes

Program Settings