Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 1.5e-94 349.7 209 100.0
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 1.6e-59 233.4 211 67.8
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 3.0e-58 229.2 215 64.2
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 1.9e-57 226.5 209 66.0
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 3.3e-57 225.7 211 65.4
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 7.3e-57 224.6 216 64.8
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.6e-56 222.2 215 63.7
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 3.6e-56 222.2 215 63.7
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 8.1e-56 221.1 215 63.3
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 1.8e-55 219.9 215 63.7
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 5.2e-55 218.4 213 62.4
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 8.9e-55 217.6 218 63.3
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 1.2e-54 217.2 217 63.6
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 1.5e-54 216.9 217 64.1
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 5.8e-54 214.9 215 60.9
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 7.5e-54 214.5 213 62.0
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 9.9e-54 214.2 217 62.7
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 1.3e-53 213.8 215 60.5
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.3e-53 213.8 215 61.4
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.3e-53 213.8 216 62.5
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 1.7e-53 213.4 216 62.5
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.7e-53 213.4 215 60.9
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 3.7e-53 212.2 207 60.4
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 3.7e-53 212.2 206 63.6
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 3.7e-53 212.2 217 62.2
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 6.4e-53 211.5 204 64.2
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 8.3e-53 211.1 211 62.6
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 8.3e-53 211.1 212 62.7
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 8.3e-53 211.1 215 61.4
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 1.4e-52 210.3 213 61.0
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 4.1e-52 208.8 217 60.8
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 5.4e-52 208.4 215 59.1
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 5.4e-52 208.4 216 61.1
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 7.1e-52 208.0 215 60.9
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 7.1e-52 208.0 212 60.4
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 9.2e-52 207.6 215 62.3
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.2e-51 207.2 213 59.2
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 6.0e-51 204.9 210 60.0
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.0e-50 204.1 216 60.6
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 1.0e-50 204.1 219 60.7
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.3e-50 203.8 215 61.4
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 1.7e-50 203.4 213 60.1
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 2.3e-50 203.0 215 59.1
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 3.9e-50 202.2 208 61.1
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 3.9e-50 202.2 208 61.5
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 5.1e-50 201.8 222 57.7
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 1.1e-49 200.7 212 59.4
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 1.5e-49 200.3 211 61.1
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.5e-49 200.3 211 61.1
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.5e-49 200.3 216 59.7
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 2.5e-49 199.5 208 60.1
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 2.5e-49 199.5 214 58.9
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 3.3e-49 199.1 206 61.2
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 4.3e-49 198.7 206 60.2
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.6e-49 198.4 211 61.6
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 7.3e-49 198.0 216 57.9
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 9.5e-49 197.6 217 57.1
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-48 197.2 211 61.1
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-48 197.2 211 61.1
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 1.2e-48 197.2 212 61.8
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 2.1e-48 196.4 214 57.5
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 2.1e-48 196.4 211 61.6
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 2.1e-48 196.4 217 56.2
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 3.6e-48 195.7 210 58.1
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 3.6e-48 195.7 215 59.5
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.7e-48 195.3 211 61.1
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 6.2e-48 194.9 211 60.2
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 8.1e-48 194.5 214 56.5
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 8.1e-48 194.5 217 59.4
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 1.4e-47 193.7 214 57.5
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 1.4e-47 193.7 216 58.3
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 5.2e-47 191.8 209 57.4
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 5.2e-47 191.8 213 56.8
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 6.8e-47 191.4 213 57.7
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 8.9e-47 191.0 212 59.4
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.2e-46 190.7 209 54.5
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 2.0e-46 189.9 210 55.2
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 2.0e-46 189.9 213 54.9
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 2.6e-46 189.5 213 56.3
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 2.6e-46 189.5 217 54.8
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.4e-46 189.1 211 59.2
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 3.4e-46 189.1 208 57.7
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 4.4e-46 188.7 213 55.9
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 4.4e-46 188.7 213 55.9
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 4.4e-46 188.7 213 55.9
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 9.9e-46 187.6 210 58.1
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 1.7e-45 186.8 210 60.0
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 1.7e-45 186.8 208 57.2
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 2.2e-45 186.4 216 56.9
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 2.2e-45 186.4 213 55.9
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 3.8e-45 185.7 214 57.9
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 6.4e-45 184.9 213 55.9
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 6.4e-45 184.9 213 55.9
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 6.4e-45 184.9 210 58.1
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 1.1e-44 184.1 211 55.0
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 1.4e-44 183.7 215 54.9
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 1.4e-44 183.7 210 56.7
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.9e-44 183.3 216 53.2
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 2.4e-44 183.0 208 54.8
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 5.4e-44 181.8 214 56.1
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 5.4e-44 181.8 214 56.1
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 5.4e-44 181.8 210 57.6
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 7.1e-44 181.4 216 55.6
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 7.1e-44 181.4 208 53.4
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 9.2e-44 181.0 208 57.7
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 9.2e-44 181.0 206 60.7
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 2.1e-43 179.9 179 58.7
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 2.1e-43 179.9 212 54.7
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 2.1e-43 179.9 209 55.0
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 6.0e-43 178.3 211 54.0
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 1.3e-42 177.2 176 59.7
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 1.7e-42 176.8 213 55.9
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 5.1e-42 175.3 211 55.9
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.1e-41 174.1 213 54.0
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 4.3e-41 172.2 212 53.3
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 7.3e-41 171.4 212 52.8
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 9.6e-41 171.0 212 53.3
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 2.1e-40 169.9 210 54.3
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 2.8e-40 169.5 212 53.3
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.6e-40 169.1 210 53.8
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 6.2e-40 168.3 212 52.8
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.8e-39 166.8 212 52.4
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 5.3e-39 165.2 209 53.1
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 9.0e-39 164.5 163 60.7
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 2.0e-38 163.3 183 59.6
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 4.4e-38 162.2 210 55.7
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.2e-37 159.8 211 54.5
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 1.9e-36 156.8 209 48.8
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 6.0e-35 151.8 144 60.4
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.3e-34 150.6 167 56.9
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.9e-33 146.7 207 45.4
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 4.3e-33 145.6 207 45.4
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 7.3e-33 144.8 207 44.9
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 3.6e-32 142.5 184 50.0
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 1.7e-29 133.7 118 68.6
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.9e-29 132.9 213 46.5
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 4.2e-28 129.0 149 50.3
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.1e-27 126.7 145 53.8
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 7.9e-27 124.8 188 51.6
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.1e-25 120.9 125 58.4
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 8.1e-24 114.8 148 49.3
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.1e-23 114.4 149 47.7
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 3.1e-23 112.8 188 42.6
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.5e-22 110.5 149 44.3
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.8e-22 108.6 150 42.7
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.3e-21 107.5 157 46.5
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 3.0e-18 96.3 154 44.2
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.6e-16 90.5 135 45.9
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 4.8e-16 89.0 151 43.0
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 6.2e-16 88.6 171 43.3
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 8.2e-16 88.2 140 44.3
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 1.1e-15 87.8 140 42.1
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.4e-14 82.8 64 65.6
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 1.7e-13 80.5 81 61.7
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.1e-12 77.8 142 40.1
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 5.5e-12 75.5 128 41.4
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 7.1e-12 75.1 102 43.1
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 6.7e-10 68.6 166 36.1
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 3.7e-08 62.8 93 44.1


User provided reference genes

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