Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 3.7e-100 368.2 190 100.0
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 5.8e-77 291.2 190 81.1
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 7.8e-74 280.8 191 79.6
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 5.1e-73 278.1 190 77.4
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 3.3e-72 275.4 189 77.2
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 5.6e-72 274.6 190 75.3
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 9.5e-72 273.9 191 78.5
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.2e-71 273.5 191 76.4
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.8e-71 272.3 192 77.1
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 3.6e-71 271.9 190 75.8
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 4.7e-71 271.6 190 75.8
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 6.2e-71 271.2 191 75.9
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.1e-71 270.8 189 73.0
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.1e-70 270.4 189 74.1
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.1e-70 270.4 191 75.4
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.4e-70 270.0 192 78.1
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.4e-70 270.0 191 75.9
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 2.3e-70 269.2 191 76.4
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.3e-70 269.2 191 76.4
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.3e-70 269.2 191 76.4
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.1e-70 268.9 191 74.9
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.0e-70 268.5 189 72.5
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 4.0e-70 268.5 195 73.8
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.0e-70 268.5 197 75.1
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.2e-69 266.9 195 74.9
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.2e-69 266.9 195 74.9
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.2e-69 266.9 188 75.0
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 2.6e-69 265.8 191 73.3
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 2.6e-69 265.8 191 76.4
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 3.4e-69 265.4 191 74.9
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 5.8e-69 264.6 189 72.0
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 5.8e-69 264.6 191 75.4
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 7.6e-69 264.2 191 72.8
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 7.6e-69 264.2 191 72.8
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 7.6e-69 264.2 191 72.8
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 7.6e-69 264.2 191 72.8
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 7.6e-69 264.2 192 73.4
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 7.6e-69 264.2 189 72.5
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 7.6e-69 264.2 193 74.6
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.3e-68 263.5 191 74.9
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.3e-68 263.5 192 74.0
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.2e-68 262.7 192 73.4
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 2.9e-68 262.3 190 73.2
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 3.7e-68 261.9 189 76.2
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 3.7e-68 261.9 190 71.6
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 3.7e-68 261.9 189 76.7
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 4.9e-68 261.5 189 75.7
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 4.9e-68 261.5 190 71.6
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 6.4e-68 261.2 189 72.5
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.1e-67 260.4 189 73.5
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.4e-67 260.0 189 72.5
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.9e-67 259.6 190 72.1
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.9e-67 259.6 195 72.3
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 2.4e-67 259.2 190 73.2
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.2e-67 258.8 192 71.9
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.2e-67 258.8 192 71.9
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 3.2e-67 258.8 192 74.5
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.2e-67 258.8 192 74.0
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 3.2e-67 258.8 195 70.8
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 4.1e-67 258.5 190 73.2
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 5.4e-67 258.1 191 71.2
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 5.4e-67 258.1 195 74.9
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 7.1e-67 257.7 189 76.7
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.2e-66 256.9 175 78.9
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 1.2e-66 256.9 192 73.4
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 2.1e-66 256.1 192 74.0
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.7e-66 255.8 189 76.2
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.5e-66 255.4 192 72.4
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 3.5e-66 255.4 162 82.1
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 4.6e-66 255.0 187 73.8
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 4.6e-66 255.0 190 70.0
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.7e-65 253.1 190 71.1
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 3.0e-65 252.3 191 70.2
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 3.9e-65 251.9 190 71.1
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 5.1e-65 251.5 191 72.8
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 6.6e-65 251.1 191 69.1
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 6.6e-65 251.1 191 69.1
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 6.6e-65 251.1 191 73.3
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.5e-64 250.0 191 69.1
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 2.5e-64 249.2 217 61.8
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 2.5e-64 249.2 191 69.1
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 2.5e-64 249.2 189 72.5
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 3.3e-64 248.8 190 68.4
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 3.3e-64 248.8 191 72.3
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 3.3e-64 248.8 180 73.3
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 5.6e-64 248.1 191 71.7
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.6e-63 245.4 207 66.7
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 6.2e-63 244.6 188 72.3
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 2.4e-62 242.7 229 62.0
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 3.1e-62 242.3 190 70.5
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 6.8e-62 241.1 192 69.3
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 2.0e-61 239.6 195 68.2
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 7.6e-61 237.7 162 76.5
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 7.6e-61 237.7 191 66.0
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 9.9e-61 237.3 160 78.8
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 1.3e-60 236.9 186 71.5
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.7e-60 236.5 172 73.3
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.7e-60 236.5 183 69.4
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.2e-60 236.1 191 65.4
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 7.1e-59 231.1 189 69.3
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.7e-57 226.5 161 73.3
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 2.3e-57 226.1 178 69.7
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.3e-57 226.1 200 63.0
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.3e-57 226.1 158 74.7
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.3e-57 226.1 192 66.1
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 2.3e-57 226.1 188 68.1
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 2.3e-57 226.1 187 66.8
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 3.9e-57 225.3 157 73.9
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 5.1e-57 224.9 176 69.3
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 5.1e-57 224.9 176 69.3
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 5.1e-57 224.9 190 69.5
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.5e-56 223.4 127 86.6
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 3.3e-56 222.2 202 63.9
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 4.3e-56 221.9 171 70.2
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 4.3e-56 221.9 194 65.5
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 4.3e-56 221.9 190 66.3
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 5.6e-56 221.5 218 57.8
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 7.3e-56 221.1 126 87.3
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 4.8e-55 218.4 198 63.1
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 2.4e-54 216.1 200 61.5
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 6.9e-54 214.5 125 87.2
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 9.0e-54 214.2 125 87.2
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 2.0e-53 213.0 165 67.3
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.6e-53 212.6 160 72.5
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-52 210.3 200 59.5
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.3e-52 210.3 165 66.7
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.7e-52 209.9 191 63.9
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.7e-52 209.9 191 62.8
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.9e-52 209.1 124 84.7
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 8.4e-52 207.6 129 81.4
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.9e-51 206.5 179 64.2
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.2e-51 205.7 187 59.9
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 9.3e-51 204.1 192 64.6
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 2.7e-50 202.6 158 70.9
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 3.5e-50 202.2 146 72.6
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 6.0e-50 201.4 146 72.6
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 6.0e-50 201.4 146 76.0
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 7.9e-50 201.1 146 72.6
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 3.0e-49 199.1 137 74.5
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.3e-47 193.7 201 56.7
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.3e-47 193.7 158 69.0
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 2.8e-47 192.6 158 68.4
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 2.2e-44 183.0 142 68.3
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.8e-44 182.2 196 54.1
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 7.1e-43 177.9 200 53.5
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 5.1e-41 171.8 125 69.6
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.5e-40 169.5 197 51.8
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 4.8e-39 165.2 195 52.3
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 6.2e-39 164.9 124 66.1
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.0e-37 159.8 196 51.0
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 3.4e-37 159.1 125 63.2
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 4.6e-34 148.7 135 57.0
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.8e-33 146.7 95 75.8
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 8.7e-33 144.4 154 53.9
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.1e-32 144.1 141 56.7
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 6.3e-31 138.3 163 47.9
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 8.2e-31 137.9 89 78.7
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.4e-30 137.1 142 52.1
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.8e-30 136.7 114 69.3
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 7.6e-29 131.3 126 63.5
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 8.4e-28 127.9 104 57.7
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.7e-25 118.2 69 85.5
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 7.4e-24 114.8 68 85.3
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.8e-23 112.8 68 83.8
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 5.0e-20 102.1 128 48.4
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 8.5e-20 101.3 128 48.4
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.6e-18 97.1 63 76.2
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 6.1e-18 95.1 69 69.6
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.1e-18 95.1 60 76.7
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.8e-17 93.6 53 84.9
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 3.9e-17 92.4 53 83.0
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 2.0e-16 90.1 47 91.5
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 4.3e-16 89.0 124 41.1
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 6.5e-12 75.1 87 49.4
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 6.7e-09 65.1 56 64.3
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 2.6e-08 63.2 37 75.7
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 4.4e-08 62.4 37 75.7
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 5.7e-08 62.0 82 47.6
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 3.7e-07 59.3 31 93.5
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 6.3e-07 58.5 37 70.3


User provided reference genes

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