Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.9e-223 779.2 520 100.0
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 2.5e-154 549.7 525 70.1
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 4.6e-153 545.4 527 71.2
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 3.2e-146 522.7 431 69.4
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 7.9e-145 518.1 431 69.6
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 4.4e-143 512.3 432 72.2
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 5.7e-143 511.9 438 71.9
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 9.7e-143 511.1 434 71.2
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 1.3e-142 510.8 438 72.1
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.3e-142 510.8 430 69.3
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 2.2e-142 510.0 436 70.0
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.8e-142 509.6 438 68.9
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 9.1e-141 504.6 434 71.2
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 3.5e-140 502.7 434 70.0
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 3.5e-140 502.7 431 71.5
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 5.0e-139 498.8 478 62.6
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 9.4e-138 494.6 441 67.6
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 2.1e-137 493.4 437 67.7
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 2.7e-137 493.0 437 70.3
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 6.1e-137 491.9 425 72.0
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.8e-136 490.3 527 63.8
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.3e-136 490.0 531 64.6
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 3.0e-136 489.6 433 68.6
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 3.3e-135 486.1 548 65.0
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 5.7e-135 485.3 433 67.7
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 1.3e-134 484.2 536 64.6
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 1.7e-134 483.8 432 71.3
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 2.2e-134 483.4 435 67.4
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 2.8e-134 483.0 536 60.3
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 6.3e-134 481.9 525 64.8
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 3.1e-133 479.6 425 68.9
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 4.1e-133 479.2 431 68.2
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 9.1e-133 478.0 433 67.7
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 2.6e-132 476.5 329 78.1
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 3.5e-132 476.1 394 73.4
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 4.5e-132 475.7 431 67.1
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 1.0e-131 474.6 433 66.5
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 1.0e-131 474.6 431 67.7
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 1.1e-130 471.1 435 69.2
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 3.2e-130 469.5 424 66.3
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 9.4e-130 468.0 526 68.1
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.2e-129 467.6 435 68.3
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.6e-129 466.1 541 63.8
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.1e-129 465.3 438 67.8
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 6.1e-129 465.3 431 67.7
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 1.0e-128 464.5 439 67.9
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 6.8e-128 461.8 419 70.9
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 3.4e-127 459.5 440 66.6
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.3e-126 457.6 452 66.2
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.7e-126 457.2 441 65.3
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.8e-126 456.4 373 70.0
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 3.7e-126 456.1 327 73.4
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.1e-125 454.5 537 63.1
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 1.6e-124 450.7 431 64.7
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 2.0e-124 450.3 476 61.1
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 5.9e-124 448.7 513 66.7
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 4.7e-121 439.1 399 67.4
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 1.0e-120 438.0 430 67.4
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 1.4e-120 437.6 443 62.5
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.8e-120 437.2 433 64.9
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 6.8e-120 435.3 418 61.0
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.5e-119 434.1 541 63.2
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 7.5e-119 431.8 546 58.4
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 1.7e-118 430.6 322 69.6
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 6.3e-118 428.7 322 69.6
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 2.4e-117 426.8 548 59.9
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 2.7e-116 423.3 459 59.3
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 2.7e-116 423.3 555 59.5
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 5.9e-116 422.2 443 60.5
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 7.7e-116 421.8 543 54.3
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.0e-115 421.4 439 58.5
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 1.7e-115 420.6 532 63.3
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 1.1e-114 417.9 543 54.1
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.9e-114 417.2 399 66.2
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 7.3e-114 415.2 451 58.3
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 9.5e-114 414.8 442 62.0
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 1.0e-112 411.4 408 66.2
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 8.9e-112 408.3 405 63.5
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 5.7e-111 405.6 434 59.4
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 4.1e-109 399.4 541 55.8
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 5.4e-109 399.1 598 47.0
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 2.7e-108 396.7 427 59.5
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 4.6e-108 396.0 443 65.7
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 1.0e-107 394.8 385 66.5
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 3.0e-107 393.3 366 67.8
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 3.9e-107 392.9 432 61.6
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 6.6e-107 392.1 386 65.3
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 2.8e-105 386.7 434 61.5
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 2.8e-105 386.7 387 64.3
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 1.0e-104 384.8 454 57.9
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.4e-104 384.4 386 64.2
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.3e-104 383.6 286 71.0
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.1e-104 383.3 277 75.8
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 2.6e-103 380.2 428 60.0
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 9.8e-103 378.3 363 67.8
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 4.9e-102 375.9 400 57.0
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 9.2e-101 371.7 400 59.5
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 6.6e-99 365.5 541 50.3
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 6.6e-99 365.5 404 57.9
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 4.3e-98 362.8 528 51.1
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 2.3e-96 357.1 441 52.4
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 5.2e-96 355.9 439 52.4
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 4.4e-95 352.8 440 54.1
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 4.4e-95 352.8 440 54.1
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 5.8e-95 352.4 360 63.9
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.4e-93 347.8 375 57.9
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 3.0e-91 340.1 237 75.5
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 5.6e-90 335.9 249 73.1
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 4.0e-88 329.7 435 47.6
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 1.9e-82 310.8 540 45.4
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 5.6e-82 309.3 432 50.2
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 1.4e-80 304.7 299 54.8
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.7e-78 297.7 339 52.5
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 6.6e-67 259.2 408 48.0
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.1e-65 254.2 429 45.2
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 3.6e-65 253.4 367 45.0
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 9.6e-58 228.8 378 48.4
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 2.8e-57 227.3 205 56.6
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.8e-56 224.6 228 55.3
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 6.5e-54 216.1 474 39.7
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.7e-52 210.7 368 40.5
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 4.6e-44 183.3 332 39.5
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.1e-42 178.7 195 59.5
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 3.7e-41 173.7 202 56.4
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 1.1e-29 135.6 197 67.5
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.6e-28 131.7 195 65.1
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 2.7e-28 131.0 195 65.1
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 2.6e-23 114.4 69 79.7
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.1e-16 92.4 84 60.7
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 1.8e-16 91.7 283 26.5
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 1.2e-12 79.0 92 54.3
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 1.2e-12 79.0 92 54.3
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.0e-11 75.9 81 56.8
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 2.0e-10 71.6 305 26.6
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 1.7e-09 68.6 106 47.2
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 1.8e-08 65.1 93 50.5


User provided reference genes

Program Settings