Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 0.0e+00 1421.0 953 100.0
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 2.2e-209 733.4 905 60.4
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 3.2e-208 729.6 909 62.4
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 2.1e-199 700.3 915 57.6
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.5e-197 694.1 914 60.1
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 1.7e-193 680.6 921 59.4
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.1e-192 677.9 963 56.3
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 2.4e-192 676.8 1028 54.4
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 3.2e-192 676.4 912 57.9
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 9.3e-192 674.9 914 60.2
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 2.7e-191 673.3 945 58.0
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 6.7e-190 668.7 917 58.7
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.1e-189 667.9 975 56.7
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 9.6e-189 664.8 898 60.7
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.4e-187 661.0 914 57.4
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.0e-186 657.1 915 57.2
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.0e-185 654.8 913 59.5
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 2.9e-185 653.3 961 56.6
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 3.3e-181 639.8 951 55.3
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 7.4e-181 638.6 831 61.3
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 3.8e-177 626.3 791 63.6
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 4.2e-176 622.9 906 57.4
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 2.7e-175 620.2 910 57.6
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 2.7e-175 620.2 917 55.6
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.5e-173 614.4 977 55.2
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.9e-173 614.0 799 60.7
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 2.5e-173 613.6 780 62.4
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.3e-172 611.3 865 49.6
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 2.8e-172 610.1 902 56.1
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.8e-172 609.4 784 60.6
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 4.8e-172 609.4 790 61.0
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 1.4e-171 607.8 1000 54.1
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.4e-171 607.8 920 52.9
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.5e-170 604.4 927 56.9
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.5e-170 602.8 930 55.6
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.7e-169 600.9 799 58.2
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 2.5e-168 597.0 787 59.7
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 3.2e-168 596.7 785 59.2
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 4.1e-163 579.7 900 54.3
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 4.1e-163 579.7 780 60.3
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 5.3e-163 579.3 917 54.4
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 9.1e-163 578.6 928 54.4
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 2.9e-161 573.5 892 56.3
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 5.0e-161 572.8 906 54.4
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 1.1e-160 571.6 743 61.8
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.9e-160 570.9 906 54.0
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 3.2e-160 570.1 914 56.5
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 2.1e-159 567.4 779 59.7
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.1e-159 567.4 940 52.4
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 3.7e-156 556.6 949 52.7
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.4e-155 554.7 777 60.4
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 3.5e-154 550.1 908 53.0
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 5.9e-154 549.3 899 52.9
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.9e-153 547.0 791 58.0
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 5.0e-153 546.2 848 54.2
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 7.2e-152 542.3 983 46.1
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 2.1e-151 540.8 952 53.0
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 8.0e-151 538.9 778 60.3
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.0e-150 538.5 942 54.1
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.0e-150 537.0 926 50.9
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 4.0e-150 536.6 762 58.1
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.2e-149 535.0 789 58.9
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 2.0e-149 534.3 902 52.3
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 9.7e-149 531.9 820 57.4
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 2.4e-147 527.3 954 48.1
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 5.3e-147 526.2 779 58.7
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 1.2e-146 525.0 1006 47.1
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.0e-146 524.2 923 49.3
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.3e-145 521.5 774 58.3
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 8.5e-145 518.8 892 51.7
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.5e-144 518.1 930 50.1
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 1.5e-144 518.1 929 46.1
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 2.7e-143 513.8 970 50.7
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 4.7e-143 513.1 959 46.8
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 6.1e-143 512.7 917 47.7
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 1.0e-142 511.9 917 49.1
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.0e-141 507.7 823 51.6
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 3.5e-138 496.9 829 50.1
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 1.0e-137 495.4 944 49.0
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 2.3e-137 494.2 918 44.2
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 2.5e-136 490.7 817 52.6
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 2.8e-135 487.3 933 49.9
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 1.0e-134 485.3 885 52.2
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 6.8e-134 482.6 934 48.5
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.1e-131 475.3 935 47.5
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 4.1e-131 473.4 916 48.8
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.5e-130 470.3 945 51.6
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.3e-129 468.4 930 51.0
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 2.9e-129 467.2 816 49.4
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 1.9e-128 464.5 759 50.3
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 2.5e-128 464.2 929 51.0
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.3e-128 463.8 891 52.3
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.2e-125 455.3 935 46.3
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 5.8e-125 453.0 940 48.9
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 5.8e-125 453.0 877 51.4
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 9.8e-125 452.2 907 50.7
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 9.8e-125 452.2 924 47.0
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 2.9e-124 450.7 930 48.4
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 4.9e-124 449.9 932 47.9
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 1.6e-122 444.9 760 46.2
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 2.7e-122 444.1 964 49.4
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.7e-122 444.1 944 46.7
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 6.0e-122 443.0 802 49.9
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.9e-120 438.0 939 46.6
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 2.0e-117 427.9 946 45.3
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 2.0e-117 427.9 946 45.3
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 9.2e-115 419.1 947 45.4
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 6.0e-114 416.4 948 43.4
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 1.7e-113 414.8 785 49.9
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 2.3e-113 414.5 913 47.8
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 3.9e-113 413.7 848 47.4
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.9e-112 411.4 921 46.3
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 2.1e-111 407.9 792 49.0
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 4.0e-110 403.7 778 48.3
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.2e-106 392.1 887 40.1
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.6e-98 365.2 851 45.1
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 7.3e-96 356.3 926 43.4
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 4.2e-91 340.5 811 42.4
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 7.1e-91 339.7 712 51.4
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 7.3e-88 329.7 848 41.6
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 2.4e-86 324.7 737 46.4
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.4e-75 288.9 269 59.1
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 4.6e-74 283.9 274 64.6
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.6e-69 268.1 263 63.9
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 5.8e-69 266.9 598 47.2
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 1.1e-67 262.7 279 56.6
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 1.3e-63 249.2 392 45.7
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 9.7e-56 223.0 845 36.3
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.5e-53 215.7 473 42.9
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.4e-53 214.5 237 59.5
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.2e-51 208.0 235 52.3
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.1e-48 199.5 467 39.6
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-43 180.6 302 42.7
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 2.9e-36 158.3 140 70.0
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 9.7e-32 143.3 157 51.6
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.4e-25 122.9 71 85.9
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 8.8e-25 120.2 126 50.0
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 9.1e-22 110.2 72 76.4
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 4.5e-21 107.8 177 42.4
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 5.4e-14 84.3 84 45.2
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 7.0e-14 84.0 92 52.2
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.3e-12 79.7 73 63.0
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.7e-12 79.3 94 53.2
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 2.9e-12 78.6 102 41.2
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 9.5e-11 73.6 70 61.4
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 1.2e-10 73.2 132 38.6
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 1.6e-10 72.8 131 38.9
MD16G1091800 Malus domestica HOM05D057391 ORTHO05D036519 2.1e-10 72.4 141 46.1
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.0e-09 70.1 131 34.4
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 4.1e-06 58.2 92 44.6


User provided reference genes

Program Settings