Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1450.6 726 100.0
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1191.8 717 83.7
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1184.9 733 81.7
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1181.4 726 82.2
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1181.0 730 82.1
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1180.2 713 82.3
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1179.5 719 83.0
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1178.3 745 80.9
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1177.5 730 82.3
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1174.5 745 80.8
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1172.5 729 81.3
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1171.4 720 82.2
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1171.0 719 82.3
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1170.6 716 81.7
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1169.1 739 81.1
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1168.7 702 83.5
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1167.1 722 81.0
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1164.4 738 79.9
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1164.1 733 81.4
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1163.3 727 81.2
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1159.8 672 85.1
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1159.8 703 82.9
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 695 82.7
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 677 84.6
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1159.1 729 80.2
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1159.1 728 81.2
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1158.7 732 80.7
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1157.5 732 80.6
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1154.0 726 80.3
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1152.9 683 83.0
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1152.1 722 81.6
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1150.6 734 79.7
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1150.2 641 88.5
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1149.4 711 81.6
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1148.3 674 84.9
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1146.7 730 79.7
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1144.4 722 80.7
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1142.5 655 85.8
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1141.7 730 79.6
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1140.9 715 80.4
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1140.6 732 79.8
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1139.0 694 82.4
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1138.3 691 82.6
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1135.9 769 77.1
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1133.2 686 81.0
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1133.2 650 85.5
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1131.3 695 80.7
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1128.6 688 82.3
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1127.1 765 76.3
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1125.9 702 80.3
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1124.0 705 80.4
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1124.0 660 85.5
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1124.0 726 79.6
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1121.7 705 80.3
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1121.3 739 77.3
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1118.2 710 79.6
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1117.1 664 82.8
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1115.9 689 81.1
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1115.5 664 82.7
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1113.6 686 81.0
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1113.6 686 81.0
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1109.0 670 81.3
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1107.8 645 84.3
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1107.4 783 72.9
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1107.4 783 72.9
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1106.3 672 81.5
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1104.0 645 82.5
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 732 77.3
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1102.8 669 81.5
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1094.3 691 79.9
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1094.3 729 77.4
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1094.0 714 77.0
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1092.4 654 82.3
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 0.0e+00 1092.0 820 70.0
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1088.9 723 77.9
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1087.8 713 76.7
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 0.0e+00 1082.8 930 63.5
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 0.0e+00 1080.5 742 76.3
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1077.0 665 82.3
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1075.5 727 76.5
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.8e-304 1048.9 763 72.5
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 1.4e-296 1022.7 673 78.8
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 1.7e-294 1015.8 786 69.1
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 1.9e-290 1002.3 694 72.3
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 3.7e-289 998.0 640 75.2
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.9e-285 985.7 571 84.1
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 1.0e-278 963.4 622 75.7
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.1e-272 943.3 565 84.4
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 4.2e-269 931.4 602 74.8
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 5.5e-269 931.0 527 86.9
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 1.2e-268 929.9 525 87.4
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 3.3e-266 921.8 503 89.5
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 4.8e-265 917.9 532 83.3
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 6.3e-265 917.5 646 72.0
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 7.7e-263 910.6 550 83.8
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 4.2e-261 904.8 510 86.7
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.3e-257 891.0 587 78.2
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 2.6e-255 885.6 605 73.9
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 8.5e-254 880.6 624 69.7
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 8.5e-246 854.0 641 67.2
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.4e-235 820.1 452 88.5
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 9.2e-232 807.4 454 87.0
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 7.0e-224 781.2 612 64.2
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.3e-214 750.4 504 75.6
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 7.6e-194 681.4 421 79.6
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 1.6e-188 663.7 411 81.0
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 5.4e-184 648.7 407 77.9
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 4.3e-181 639.0 352 87.8
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 8.7e-174 614.8 401 76.3
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 1.4e-152 544.3 317 84.2
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.4e-139 500.4 447 61.5
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 2.5e-128 463.8 597 42.9
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 4.0e-126 456.4 685 38.1
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 7.3e-112 409.1 372 60.8
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 1.2e-109 401.7 358 59.5
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 1.3e-108 398.3 678 37.9
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 2.3e-102 377.5 505 42.6
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 1.6e-95 354.8 318 58.8
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.1e-95 354.4 229 78.6
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.7e-81 308.1 172 88.4
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 6.9e-70 269.6 161 80.1
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.3e-57 228.8 166 65.7
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 8.7e-57 226.1 196 59.2
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 1.5e-53 215.3 139 80.6
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 6.7e-49 199.9 114 88.6
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 3.9e-41 174.1 253 46.6
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 8.7e-41 172.9 186 48.4
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.5e-40 172.2 263 42.6
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 2.2e-39 168.3 105 76.2
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 3.8e-36 157.5 112 68.8
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.6e-34 152.1 106 70.8
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 3.6e-34 151.0 94 76.6
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 2.3e-33 148.3 73 95.9
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 5.1e-33 147.1 83 85.5
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 4.8e-31 140.6 139 57.6
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 5.3e-30 137.1 71 80.3
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 1.7e-28 132.1 97 72.2
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 1.0e-25 122.9 97 63.9
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 6.7e-25 120.2 87 69.0
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.6e-18 99.0 60 73.3
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 2.6e-16 91.7 49 77.6
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 6.3e-15 87.0 50 76.0
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 5.3e-14 84.0 59 71.2
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 1.2e-13 82.8 73 57.5
SEGI_19526 Sequoiadendron giganteum HOM05D005018 ORTHO05D043556 3.1e-06 58.2 28 89.3


User provided reference genes

Program Settings