Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 0.0e+00 1172.9 610 100.0
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 3.7e-258 894.8 618 78.2
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.4e-249 866.3 620 75.5
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.5e-248 862.8 617 75.2
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 7.2e-246 854.0 618 74.1
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 3.0e-244 848.6 606 74.8
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 6.7e-244 847.4 630 73.3
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.1e-243 846.7 617 73.7
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 2.5e-243 845.5 631 72.9
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 4.3e-243 844.7 619 74.5
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 5.7e-243 844.3 639 72.3
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 9.7e-243 843.6 618 73.9
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 4.8e-242 841.3 630 73.5
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 3.1e-241 838.6 618 73.8
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.5e-240 836.3 630 72.9
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 2.6e-240 835.5 630 73.8
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 5.9e-240 834.3 629 73.3
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.7e-239 832.8 616 72.4
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.9e-238 829.3 618 73.8
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.2e-238 827.4 629 72.5
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.2e-237 826.6 620 72.6
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 2.3e-236 822.4 618 72.2
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.6e-235 818.9 633 71.1
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.4e-233 813.1 618 71.2
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.1e-233 810.4 657 69.4
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.2e-232 810.1 622 70.1
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.5e-230 802.4 621 71.2
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 6.1e-229 797.7 615 70.9
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.0e-228 797.0 616 70.6
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.4e-228 796.6 620 70.8
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 3.0e-228 795.4 617 70.5
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 6.7e-228 794.3 622 70.4
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 9.7e-227 790.4 644 69.1
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.7e-226 788.5 617 70.2
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 4.8e-226 788.1 625 70.7
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 1.4e-225 786.6 617 69.9
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 9.1e-225 783.9 660 66.7
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.2e-224 783.5 615 70.7
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.2e-224 783.5 614 70.7
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 4.5e-224 781.6 602 71.6
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.0e-223 780.4 632 69.1
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.7e-223 779.6 618 70.4
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 2.9e-223 778.9 619 69.6
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 5.0e-223 778.1 624 69.4
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.5e-222 776.5 628 68.6
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 1.9e-222 776.2 631 68.8
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 5.5e-222 774.6 610 71.3
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.4e-220 770.0 623 70.0
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 3.0e-220 768.8 637 66.7
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 3.0e-220 768.8 615 68.5
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 4.1e-217 758.4 620 68.9
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.6e-216 756.5 620 66.8
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 5.9e-216 754.6 627 67.0
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 1.7e-215 753.1 602 69.1
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 1.9e-214 749.6 617 67.6
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.5e-214 749.2 618 66.5
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 2.5e-214 749.2 636 66.7
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 5.5e-214 748.0 620 66.3
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 9.4e-214 747.3 615 66.7
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.0e-212 743.8 630 66.5
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 3.0e-212 742.3 635 66.0
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 6.8e-212 741.1 657 63.8
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.4e-209 733.4 620 66.8
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 4.1e-209 731.9 614 66.4
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 9.1e-209 730.7 626 64.7
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 2.0e-208 729.6 560 71.2
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.7e-208 729.2 651 63.1
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 3.5e-208 728.8 613 66.6
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 1.0e-207 727.2 623 64.8
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.9e-207 725.7 613 66.2
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 6.6e-207 724.5 625 65.3
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.9e-206 723.0 613 66.1
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 7.2e-206 721.1 621 64.3
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 3.6e-205 718.8 615 65.9
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 1.0e-204 717.2 625 65.0
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-203 713.0 625 64.5
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 4.4e-203 711.8 613 65.7
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.3e-202 708.0 619 64.8
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-201 706.1 623 64.2
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.6e-200 703.4 642 62.3
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 7.8e-200 701.0 609 62.7
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.7e-199 699.9 625 64.0
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 5.0e-199 698.4 631 63.7
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 2.1e-197 693.0 489 74.4
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 2.8e-197 692.6 629 62.5
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.8e-196 689.9 533 70.4
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 1.2e-195 687.2 621 64.4
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 4.9e-194 681.8 570 66.8
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.9e-193 679.9 627 62.7
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 2.4e-193 679.5 566 66.3
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 5.4e-193 678.3 561 67.0
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.2e-192 677.2 594 63.3
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 2.0e-192 676.4 633 62.6
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 2.1e-189 666.4 555 67.6
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.2e-187 660.6 588 63.1
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 1.4e-185 653.7 619 59.5
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 3.2e-185 652.5 617 60.6
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 2.7e-184 649.4 532 68.6
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 3.3e-182 642.5 624 59.9
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.9e-177 626.7 621 58.1
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 5.4e-177 625.2 562 63.2
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 6.8e-172 608.2 619 57.0
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 4.4e-171 605.5 596 60.4
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 9.9e-163 577.8 518 62.2
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.9e-161 573.5 398 75.4
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 4.5e-155 552.4 339 82.6
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 2.8e-149 533.1 340 80.3
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 7.1e-145 518.5 613 52.0
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.0e-144 515.4 319 81.2
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 8.7e-143 511.5 336 77.4
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 8.7e-143 511.5 506 59.9
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 1.5e-139 500.7 570 52.8
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.8e-139 498.8 623 51.4
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.7e-133 479.6 398 69.1
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.8e-133 479.2 435 60.9
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 1.0e-130 471.5 518 54.1
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 9.1e-108 395.2 654 40.2
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 4.1e-100 369.8 401 55.4
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 7.0e-100 369.0 374 59.1
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.7e-93 347.8 278 68.0
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.7e-91 339.0 340 60.3
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 4.3e-89 333.2 196 87.2
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 1.4e-87 328.2 619 38.4
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 9.2e-84 315.5 326 56.7
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-83 314.3 365 50.1
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 1.6e-80 304.7 679 34.5
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 4.7e-80 303.1 230 69.1
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 9.2e-76 288.9 277 63.9
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 5.8e-70 269.6 226 59.7
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.9e-69 266.5 242 61.2
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 2.4e-68 264.2 276 57.2
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.1e-68 262.7 284 59.2
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.5e-65 254.2 338 48.8
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.1e-60 238.8 275 56.0
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 3.2e-60 237.3 277 53.1
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 2.1e-56 224.6 274 52.2
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 3.6e-56 223.8 647 30.8
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 8.9e-55 219.2 271 50.9
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 3.4e-54 217.2 272 54.8
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 6.0e-51 206.5 238 49.6
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-48 198.4 119 81.5
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.1e-48 198.0 149 71.8
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 6.2e-48 196.4 106 91.5
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.4e-44 183.3 211 57.3
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 1.1e-41 175.6 273 41.4
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.4e-39 168.7 110 76.4
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.1e-39 167.5 169 60.9
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.5e-36 156.8 195 46.7
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.6e-35 155.2 232 41.8
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.6e-32 145.2 75 97.3
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 2.8e-32 144.4 75 97.3
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 6.2e-32 143.3 76 96.1
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.2e-32 143.3 147 60.5
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.8e-31 141.7 321 33.6
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 3.1e-31 141.0 153 55.6
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.8e-29 134.0 385 31.4
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 3.8e-29 134.0 126 61.1
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 4.6e-27 127.1 299 35.5
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 6.7e-26 123.2 168 48.2
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 4.3e-25 120.6 174 43.7
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 9.6e-25 119.4 113 57.5
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 9.0e-23 112.8 121 52.1
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 4.5e-22 110.5 124 58.9
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.0e-21 109.4 252 32.1
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.0e-21 109.4 157 49.0
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 6.5e-21 106.7 126 42.1
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 2.5e-17 94.7 77 62.3
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 2.9e-13 81.3 107 48.6
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.1e-09 69.3 98 48.0
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 2.6e-09 68.2 163 38.7
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 2.2e-08 65.1 55 60.0
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.8e-07 62.0 39 76.9
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 3.1e-07 61.2 38 89.5
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 9.1e-07 59.7 38 86.8
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 5.9e-06 57.0 73 45.2
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 7.7e-06 56.6 62 53.2


User provided reference genes

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