Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.5e-164 582.8 301 100.0
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 2.2e-131 472.6 302 81.1
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 2.4e-130 469.2 302 81.5
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.9e-127 459.5 308 78.2
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 1.8e-125 453.0 293 81.6
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.8e-125 453.0 301 79.7
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 2.0e-124 449.5 300 78.7
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 3.4e-124 448.7 304 78.6
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 3.4e-124 448.7 295 78.3
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 1.3e-123 446.8 302 79.1
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.9e-122 443.0 298 78.9
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.5e-122 442.6 302 77.2
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 3.2e-122 442.2 297 79.8
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 4.2e-122 441.8 300 78.0
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 7.1e-122 441.0 309 76.1
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 1.2e-121 440.3 314 75.2
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 2.7e-121 439.1 295 79.0
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 6.0e-121 438.0 295 78.0
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 6.0e-121 438.0 299 77.9
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 1.3e-120 436.8 314 74.5
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 1.3e-120 436.8 297 78.8
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 2.5e-119 432.6 292 80.5
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 3.3e-119 432.2 294 79.3
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 4.3e-119 431.8 305 74.4
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 4.3e-119 431.8 303 74.9
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.3e-119 431.8 303 74.9
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 4.3e-119 431.8 294 78.9
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 5.7e-119 431.4 301 77.7
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 9.7e-119 430.6 298 76.2
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.3e-118 430.3 302 76.2
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.3e-118 430.3 307 75.6
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 1.3e-118 430.3 294 78.6
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 1.3e-118 430.3 291 76.6
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.3e-118 430.3 300 75.7
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 2.2e-118 429.5 297 76.4
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.8e-118 429.1 294 78.6
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 4.8e-118 428.3 292 79.5
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 4.8e-118 428.3 305 75.1
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 4.8e-118 428.3 303 73.9
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 4.8e-118 428.3 302 75.2
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.4e-117 426.8 302 73.5
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 1.4e-117 426.8 303 73.6
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 1.8e-117 426.4 305 74.8
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 1.8e-117 426.4 302 74.2
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.8e-117 426.4 315 74.6
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 3.1e-117 425.6 308 74.7
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 5.3e-117 424.9 302 74.8
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 9.0e-117 424.1 297 77.8
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 9.0e-117 424.1 303 75.9
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 2.0e-116 422.9 300 76.3
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 7.6e-116 421.0 352 66.8
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 2.2e-115 419.5 306 73.9
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 5.0e-115 418.3 327 72.8
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 6.5e-115 417.9 300 74.0
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 8.5e-115 417.5 307 73.0
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.7e-113 412.5 299 74.2
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 3.6e-113 412.1 299 73.9
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 4.6e-113 411.8 303 72.3
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 7.9e-113 411.0 311 72.7
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 5.1e-112 408.3 326 67.8
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 6.7e-112 407.9 299 71.6
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 6.7e-112 407.9 367 62.7
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 6.7e-112 407.9 310 70.6
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 8.8e-112 407.5 301 71.4
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 1.9e-111 406.4 286 76.2
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 9.7e-111 404.1 292 73.6
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 9.7e-111 404.1 292 73.6
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 1.7e-110 403.3 307 70.7
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 6.3e-110 401.4 306 71.2
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.4e-109 400.2 371 60.9
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 2.4e-109 399.4 295 72.9
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 2.0e-108 396.4 282 73.8
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.8e-107 392.1 295 72.2
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 1.4e-106 390.2 321 67.6
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 6.1e-105 384.8 285 72.3
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 3.0e-104 382.5 275 73.1
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 2.0e-103 379.8 343 61.8
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 5.7e-103 378.3 327 64.2
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 5.7e-103 378.3 282 74.1
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 6.3e-102 374.8 305 69.8
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 1.8e-101 373.2 252 79.0
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 2.4e-101 372.9 249 79.5
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 4.1e-101 372.1 255 75.3
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 4.1e-101 372.1 263 75.7
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 5.3e-101 371.7 251 78.1
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 5.9e-100 368.2 299 68.2
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.9e-100 368.2 302 67.2
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 5.9e-100 368.2 249 78.3
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 2.9e-99 365.9 257 75.9
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 8.0e-97 357.8 372 57.3
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 2.6e-95 352.8 209 84.7
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 4.4e-95 352.1 260 71.2
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 3.1e-93 345.9 232 76.3
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 2.0e-92 343.2 339 58.7
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.3e-91 340.5 211 80.6
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 3.8e-91 339.0 245 75.1
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 5.0e-91 338.6 322 59.6
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.9e-90 336.7 290 64.5
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 1.9e-90 336.7 297 62.0
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.5e-90 336.3 314 63.1
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 2.5e-90 336.3 207 81.2
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 8.0e-89 331.3 240 77.5
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 2.3e-88 329.7 262 69.1
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 4.4e-87 325.5 298 63.8
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.7e-86 323.6 253 70.0
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.8e-86 322.8 249 70.3
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.8e-83 312.4 325 54.8
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 1.5e-82 310.5 240 70.4
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 4.2e-82 308.9 274 64.6
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.4e-80 303.9 184 83.2
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 1.4e-80 303.9 254 66.5
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 1.2e-79 300.8 295 55.9
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.7e-78 297.0 294 59.2
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 3.0e-72 276.2 232 66.4
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 5.7e-71 271.9 155 89.7
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 9.8e-71 271.2 165 81.8
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.8e-70 269.6 290 53.1
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 3.7e-70 269.2 199 70.4
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 6.3e-70 268.5 245 59.6
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 6.6e-67 258.5 350 45.7
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.6e-65 253.8 294 51.0
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 1.1e-61 241.1 210 63.8
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 5.4e-53 212.2 157 71.3
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 2.7e-52 209.9 127 85.8
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 6.2e-33 145.6 118 66.9
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 3.8e-30 136.3 331 34.1
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 7.1e-29 132.1 297 32.3
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 1.9e-18 97.4 92 65.2
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 9.6e-18 95.1 329 28.9
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 2.4e-16 90.5 80 61.2
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 3.2e-13 80.1 57 68.4
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 2.3e-11 73.9 52 75.0
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 2.5e-10 70.5 184 34.2
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 4.3e-10 69.7 57 68.4
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 4.8e-09 66.2 67 58.2
CDE04G0373 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.6e-07 58.9 46 69.6


User provided reference genes

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