Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G986.45 Capsicum annuum HOM05D001260 ORTHO05D004134 8.0e-113 410.6 233 100.0
CAN.G986.46 Capsicum annuum HOM05D001260 ORTHO05D004134 8.0e-113 410.6 233 100.0
Sopen03g027210 Solanum pennellii HOM05D001260 ORTHO05D004134 1.7e-86 323.2 233 81.5
Solyc03g079920.3 Solanum lycopersicum HOM05D001260 ORTHO05D004134 3.7e-86 322.0 233 81.1
PGSC0003DMG400021693 Solanum tuberosum HOM05D001260 ORTHO05D004134 1.4e-85 320.1 233 82.0
Nitab4.5_0004474g0060 Nicotiana tabacum HOM05D001260 ORTHO05D004134 2.9e-78 295.8 228 72.8
Nitab4.5_0000779g0070 Nicotiana tabacum HOM05D001260 ORTHO05D004134 1.2e-76 290.4 228 71.5
Cc02_g07290 Coffea canephora HOM05D001260 ORTHO05D004134 1.5e-66 256.9 236 65.3
Hma1.2p1_0039F.1_g024740 Hydrangea macrophylla HOM05D001260 ORTHO05D004134 1.5e-66 256.9 238 65.1
Dinv16267 Davidia involucrata HOM05D001260 ORTHO05D004134 3.6e-65 252.3 222 67.6
Oeu039009.1 Olea europaea HOM05D001260 ORTHO05D004134 1.3e-62 243.8 235 63.8
Rhsim03G0137000 Rhododendron simsii HOM05D001260 ORTHO05D004134 4.9e-62 241.9 239 63.2
CiPaw.01G292400 Carya illinoinensis HOM05D001260 ORTHO05D004134 9.3e-61 237.7 237 62.9
QL08p061745 Quercus lobata HOM05D001260 ORTHO05D004134 9.3e-61 237.7 237 62.4
CSS0048341 Camellia sinensis var. sinensis HOM05D001260 ORTHO05D004134 6.0e-60 235.0 239 62.3
GSVIVG01016463001 Vitis vinifera HOM05D001260 ORTHO05D004134 1.9e-58 229.9 239 60.3
MSTRG.259 Avicennia marina HOM05D001260 ORTHO05D004134 3.3e-58 229.2 235 60.4
DCAR_011747 Daucus carota HOM05D001260 ORTHO05D004134 4.3e-58 228.8 238 62.6
Sabra08G0044800 Salix brachista HOM05D001260 ORTHO05D004134 2.1e-57 226.5 238 60.1
Potri.008G060700 Populus trichocarpa HOM05D001260 ORTHO05D004134 8.1e-57 224.6 238 59.2
TWI38G0285 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 1.5e-55 220.3 238 58.8
Eucgr.J02123 Eucalyptus grandis HOM05D001260 ORTHO05D004134 4.5e-55 218.8 232 59.5
Duzib114G0845 Durio zibethinus HOM05D001260 ORTHO05D004134 5.8e-55 218.4 236 60.6
Gohir.A05G302400 Gossypium hirsutum HOM05D001260 ORTHO05D004134 6.4e-54 214.9 231 59.3
Nn2g13504 Nelumbo nucifera HOM05D001260 ORTHO05D004134 1.1e-53 214.2 207 63.3
TWI63G0278 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 1.1e-53 214.2 239 57.3
Manes.10G022400 Manihot esculenta HOM05D001260 ORTHO05D004134 1.4e-53 213.8 241 57.3
Gohir.D05G301900 Gossypium hirsutum HOM05D001260 ORTHO05D004134 2.4e-53 213.0 231 59.3
Gorai.009G320000 Gossypium raimondii HOM05D001260 ORTHO05D004134 2.4e-53 213.0 231 59.3
RcHm_v2.0_Chr1g0368661 Rosa chinensis HOM05D001260 ORTHO05D004134 2.4e-53 213.0 235 57.9
Atru.chr12.295 Acer truncatum HOM05D001260 ORTHO05D004134 5.5e-53 211.8 236 58.1
Atru.chr12.334 Acer truncatum HOM05D001260 ORTHO05D004134 5.5e-53 211.8 238 58.8
Thecc.10G033200 Theobroma cacao HOM05D001260 ORTHO05D004134 1.2e-52 210.7 203 64.0
CANSAT56G4350 Cannabis sativa HOM05D001260 ORTHO05D004134 1.8e-51 206.8 236 58.1
Lalb_Chr04g0250961 Lupinus albus HOM05D001260 ORTHO05D004134 1.1e-50 204.1 240 55.8
FvH4_7g23510 Fragaria vesca HOM05D001260 ORTHO05D004134 1.5e-50 203.8 235 55.7
FAN06G4376 Fragaria x ananassa HOM05D001260 ORTHO05D004134 2.5e-50 203.0 235 55.7
FAN03G2667 Fragaria x ananassa HOM05D001260 ORTHO05D004134 3.3e-50 202.6 235 55.7
FAN10G0370 Fragaria x ananassa HOM05D001260 ORTHO05D004134 4.3e-50 202.2 235 55.3
Gohir.A10G224000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 4.3e-50 202.2 225 60.0
Cpa.g.sc19.263 Carica papaya HOM05D001260 ORTHO05D004134 7.4e-50 201.4 221 58.4
Migut.F00740 Erythranthe guttata HOM05D001260 ORTHO05D004134 7.4e-50 201.4 235 55.7
FvH4_7g23851 Fragaria vesca HOM05D001260 ORTHO05D004134 1.3e-49 200.7 235 54.9
MD07G1205000 Malus domestica HOM05D001260 ORTHO05D004134 1.6e-49 200.3 233 54.9
FAN06G3528 Fragaria x ananassa HOM05D001260 ORTHO05D004134 2.1e-49 199.9 235 54.9
Gohir.D10G237000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 2.8e-49 199.5 222 59.5
MD01G1140700 Malus domestica HOM05D001260 ORTHO05D004134 2.8e-49 199.5 224 57.1
Phvul.008G230000 Phaseolus vulgaris HOM05D001260 ORTHO05D004134 3.7e-49 199.1 240 56.2
VMungo0647G2094 Vigna mungo HOM05D001260 ORTHO05D004134 3.7e-49 199.1 240 55.4
Ca_05847_v3 Cicer arietinum L. HOM05D001260 ORTHO05D004134 6.2e-49 198.4 240 55.8
MELO3C008247.2 Cucumis melo HOM05D001260 ORTHO05D004134 6.2e-49 198.4 235 54.5
Manes.07G121400 Manihot esculenta HOM05D001260 ORTHO05D004134 6.2e-49 198.4 238 55.9
Sed0007578 Sechium edule HOM05D001260 ORTHO05D004134 1.1e-48 197.6 235 54.9
CsaV3_6G001430 Cucumis sativus L. HOM05D001260 ORTHO05D004134 1.4e-48 197.2 235 54.9
Glyma.02G251500 Glycine max HOM05D001260 ORTHO05D004134 1.8e-48 196.8 240 56.7
Lalb_Chr17g0346411 Lupinus albus HOM05D001260 ORTHO05D004134 1.8e-48 196.8 240 54.2
Gorai.011G270700 Gossypium raimondii HOM05D001260 ORTHO05D004134 2.4e-48 196.4 225 58.7
Medtr5g081240 Medicago truncatula HOM05D001260 ORTHO05D004134 2.4e-48 196.4 239 55.2
Sed0004245 Sechium edule HOM05D001260 ORTHO05D004134 9.0e-48 194.5 236 55.1
Glyma.14G065300 Glycine max HOM05D001260 ORTHO05D004134 2.6e-47 193.0 240 56.7
Ciclev10033559m.g Citrus clementina HOM05D001260 ORTHO05D004134 7.6e-47 191.4 201 59.2
LjContig00141g0022758 Lotus japonicus HOM05D001260 ORTHO05D004134 6.5e-46 188.3 239 52.3
Lalb_Chr10g0104791 Lupinus albus HOM05D001260 ORTHO05D004134 3.2e-45 186.0 240 51.7
ClCG11G006570 Citrullus lanatus HOM05D001260 ORTHO05D004134 5.5e-45 185.3 261 49.4
TPR.G25828 Trifolium pratense HOM05D001260 ORTHO05D004134 7.1e-45 184.9 242 54.5
GSVIVG01008874001 Vitis vinifera HOM05D001260 ORTHO05D004134 7.1e-45 184.9 238 51.7
Hund12217 Selenicereus undatus HOM05D001260 ORTHO05D004134 1.2e-44 184.1 238 53.4
TAR369G0466 Trochodendron aralioides HOM05D001260 ORTHO05D004134 3.5e-44 182.6 220 55.9
COL.COLO4_25532 Corchorus olitorius HOM05D001260 ORTHO05D004134 4.6e-44 182.2 188 59.6
PGR044G1255 Punica granatum HOM05D001260 ORTHO05D004134 6.0e-44 181.8 239 54.4
Gorai.011G270500 Gossypium raimondii HOM05D001260 ORTHO05D004134 1.3e-43 180.6 223 55.6
Psat7g258880 Pisum sativum HOM05D001260 ORTHO05D004134 1.3e-43 180.6 240 51.7
Oeu001521.1 Olea europaea HOM05D001260 ORTHO05D004134 2.3e-43 179.9 218 54.1
TPR.G1704 Trifolium pratense HOM05D001260 ORTHO05D004134 3.0e-43 179.5 242 53.7
ECA233G1462 Erigeron canadensis HOM05D001260 ORTHO05D004134 8.7e-43 177.9 236 50.0
Thhalv10020101m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 2.5e-42 176.4 244 49.6
EL10Ac3g06309 Beta vulgaris HOM05D001260 ORTHO05D004134 1.6e-41 173.7 238 47.9
Aqoxy1G00447 Aquilegia oxysepala HOM05D001260 ORTHO05D004134 2.2e-41 173.3 237 50.2
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 2.2e-41 173.3 240 47.5
THA.LOC104826868 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 2.8e-41 172.9 243 50.6
Sp3g09610 Schrenkiella parvula HOM05D001260 ORTHO05D004134 6.3e-41 171.8 232 50.0
AT5G05970 Arabidopsis thaliana HOM05D001260 ORTHO05D004134 1.4e-40 170.6 235 49.4
Lsat_1_v5_gn_8_14640 Lactuca sativa HOM05D001260 ORTHO05D004134 2.4e-40 169.9 242 52.1
arahy.Tifrunner.gnm1.ann1.1DVI41 Arachis hypogaea HOM05D001260 ORTHO05D004134 4.1e-40 169.1 227 52.0
TAR636G2673 Trochodendron aralioides HOM05D001260 ORTHO05D004134 5.3e-40 168.7 167 59.9
AUR62030032 Chenopodium quinoa HOM05D001260 ORTHO05D004134 6.9e-40 168.3 233 46.8
Thhalv10012734m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 6.9e-40 168.3 238 50.8
Hund22801 Selenicereus undatus HOM05D001260 ORTHO05D004134 2.6e-39 166.4 237 49.8
THA.LOC104816577 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 2.6e-39 166.4 241 46.5
FAN01G0960 Fragaria x ananassa HOM05D001260 ORTHO05D004134 3.4e-39 166.0 294 43.9
AL6G15910 Arabidopsis lyrata HOM05D001260 ORTHO05D004134 2.2e-38 163.3 237 48.5
Carub.0006s0486 Capsella rubella HOM05D001260 ORTHO05D004134 2.2e-38 163.3 235 49.8
C05p56770 Brassica napus HOM05D001260 ORTHO05D004134 5.0e-38 162.2 237 50.2
BolC5t34341H Brassica oleracea HOM05D001260 ORTHO05D004134 5.0e-38 162.2 237 50.2
BcaNung07355 Brassica carinata HOM05D001260 ORTHO05D004134 1.4e-37 160.6 235 50.2
Sp6g36920 Schrenkiella parvula HOM05D001260 ORTHO05D004134 1.4e-37 160.6 237 48.1
Gorai.011G270300 Gossypium raimondii HOM05D001260 ORTHO05D004134 2.5e-37 159.8 176 56.2
Ciclev10030832m.g Citrus clementina HOM05D001260 ORTHO05D004134 3.2e-37 159.5 271 44.6
A05p38010 Brassica napus HOM05D001260 ORTHO05D004134 4.2e-37 159.1 239 49.0
BraA05t22592Z Brassica rapa HOM05D001260 ORTHO05D004134 4.2e-37 159.1 239 49.0
Aa31LG11G7010 Aethionema arabicum HOM05D001260 ORTHO05D004134 2.7e-36 156.4 232 48.3
HPP92_020548 Vanilla planifolia HOM05D001260 ORTHO05D004134 4.6e-36 155.6 238 45.4
BraA10t45077Z Brassica rapa HOM05D001260 ORTHO05D004134 6.1e-36 155.2 241 45.2
AUR62002609 Chenopodium quinoa HOM05D001260 ORTHO05D004134 5.1e-35 152.1 198 49.0
arahy.Tifrunner.gnm1.ann1.TM7LMJ Arachis hypogaea HOM05D001260 ORTHO05D004134 8.7e-35 151.4 224 48.2
Sabra10G0152200 Salix brachista HOM05D001260 ORTHO05D004134 1.1e-34 151.0 258 47.3
ATR0559G059 Amborella trichopoda HOM05D001260 ORTHO05D004134 1.5e-34 150.6 243 46.5
BolC9t59841H Brassica oleracea HOM05D001260 ORTHO05D004134 2.5e-34 149.8 241 44.0
BcaB06g25631 Brassica carinata HOM05D001260 ORTHO05D004134 1.3e-33 147.5 229 46.3
A10p30380 Brassica napus HOM05D001260 ORTHO05D004134 1.3e-33 147.5 241 44.8
C09p70820 Brassica napus HOM05D001260 ORTHO05D004134 1.7e-33 147.1 241 44.4
CARHR207240 Cardamine hirsuta HOM05D001260 ORTHO05D004134 4.1e-32 142.5 236 46.2
PSO339G0232 Papaver somniferum HOM05D001260 ORTHO05D004134 4.1e-32 142.5 224 46.0
PSO384G2594 Papaver somniferum HOM05D001260 ORTHO05D004134 5.3e-32 142.1 224 46.4
Thecc.10G033600 Theobroma cacao HOM05D001260 ORTHO05D004134 8.5e-30 134.8 130 61.5
Os09g0267500 Oryza sativa ssp. japonica HOM05D001260 ORTHO05D004134 1.2e-28 131.0 236 44.5
SalBow6G0807 Salvia bowleyana HOM05D001260 ORTHO05D004134 5.1e-27 125.6 228 43.0
Rhsim08G0019600 Rhododendron simsii HOM05D001260 ORTHO05D004134 2.0e-23 113.6 231 42.4
BcaNung06227 Brassica carinata HOM05D001260 ORTHO05D004134 6.5e-22 108.6 154 48.7
Gohir.D10G236624 Gossypium hirsutum HOM05D001260 ORTHO05D004134 6.5e-22 108.6 97 63.9
Duzib128G0118 Durio zibethinus HOM05D001260 ORTHO05D004134 5.5e-21 105.5 98 61.2
Potri.010G197700 Populus trichocarpa HOM05D001260 ORTHO05D004134 1.6e-20 104.0 143 51.7
SEGI_35518 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 2.1e-20 103.6 258 37.6
Sc05g0005760 Simmondsia chinensis HOM05D001260 ORTHO05D004134 4.7e-20 102.4 130 52.3
Oeu031370.1 Olea europaea HOM05D001260 ORTHO05D004134 3.9e-19 99.4 100 59.0
Pp3c3_3110 Physcomitrium patens HOM05D001260 ORTHO05D004134 2.9e-14 83.2 190 36.8
RcHm_v2.0_Chr4g0410241 Rosa chinensis HOM05D001260 ORTHO05D004134 2.1e-12 77.0 61 60.7
CBR_g37200 Chara braunii HOM05D001260 ORTHO05D004134 2.7e-12 76.6 85 47.1
Pp3c4_30600 Physcomitrium patens HOM05D001260 ORTHO05D004134 3.6e-12 76.3 180 33.9
Rhsim04G0027700 Rhododendron simsii HOM05D001260 ORTHO05D004134 1.8e-11 73.9 123 40.7
Mapoly0118s0019 Marchantia polymorpha HOM05D001260 ORTHO05D004134 3.0e-11 73.2 238 33.6
COL.COLO4_36753 Corchorus olitorius HOM05D001260 ORTHO05D004134 1.5e-10 70.9 106 50.0
SMO271G0180 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 1.5e-10 70.9 91 47.3
Pp3c13_5000 Physcomitrium patens HOM05D001260 ORTHO05D004134 2.0e-10 70.5 193 34.7
Pp3c26_11450 Physcomitrium patens HOM05D001260 ORTHO05D004134 3.3e-10 69.7 253 32.8
AagrBONN_evm.TU.Sc2ySwM_344.891 Anthoceros agrestis HOM05D001260 ORTHO05D004134 9.7e-10 68.2 152 34.2
Gorai.011G270200 Gossypium raimondii HOM05D001260 ORTHO05D004134 1.7e-09 67.4 52 71.2
RcHm_v2.0_Chr1g0315431 Rosa chinensis HOM05D001260 ORTHO05D004134 4.1e-08 62.8 89 47.2
RcHm_v2.0_Chr1g0324411 Rosa chinensis HOM05D001260 ORTHO05D004134 4.1e-08 62.8 89 47.2
SalBow6G1429 Salvia bowleyana HOM05D001260 ORTHO05D004134 4.1e-08 62.8 228 30.7
RcHm_v2.0_Chr1g0369591 Rosa chinensis HOM05D001260 ORTHO05D004134 1.6e-07 60.8 89 46.1


User provided reference genes

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