Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G986.45 Capsicum annuum HOM05D001260 ORTHO05D004134 9.6e-262 906.4 484 100.0
Sopen03g027210 Solanum pennellii HOM05D001260 ORTHO05D004134 3.7e-221 771.5 484 86.4
PGSC0003DMG400021693 Solanum tuberosum HOM05D001260 ORTHO05D004134 1.6e-219 766.1 484 86.6
Solyc03g079920.3 Solanum lycopersicum HOM05D001260 ORTHO05D004134 2.0e-219 765.8 485 86.0
Nitab4.5_0004474g0060 Nicotiana tabacum HOM05D001260 ORTHO05D004134 2.9e-205 718.8 476 80.0
Nitab4.5_0000779g0070 Nicotiana tabacum HOM05D001260 ORTHO05D004134 1.7e-202 709.5 477 79.7
Dinv16267 Davidia involucrata HOM05D001260 ORTHO05D004134 2.5e-153 546.2 493 65.1
Cc02_g07290 Coffea canephora HOM05D001260 ORTHO05D004134 4.3e-153 545.4 493 63.7
CSS0048341 Camellia sinensis var. sinensis HOM05D001260 ORTHO05D004134 5.8e-150 535.0 499 64.1
Rhsim03G0137000 Rhododendron simsii HOM05D001260 ORTHO05D004134 4.8e-144 515.4 499 61.5
Hma1.2p1_0039F.1_g024740 Hydrangea macrophylla HOM05D001260 ORTHO05D004134 2.2e-141 506.5 495 61.4
CiPaw.01G292400 Carya illinoinensis HOM05D001260 ORTHO05D004134 1.9e-137 493.4 497 59.6
QL08p061745 Quercus lobata HOM05D001260 ORTHO05D004134 1.3e-136 490.7 498 59.8
TWI38G0285 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 5.3e-135 485.3 496 58.3
Oeu039009.1 Olea europaea HOM05D001260 ORTHO05D004134 5.9e-134 481.9 492 58.9
Potri.008G060700 Populus trichocarpa HOM05D001260 ORTHO05D004134 2.9e-133 479.6 498 59.0
Duzib114G0845 Durio zibethinus HOM05D001260 ORTHO05D004134 5.0e-133 478.8 505 58.4
DCAR_011747 Daucus carota HOM05D001260 ORTHO05D004134 1.4e-132 477.2 493 59.0
TWI63G0278 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 3.2e-132 476.1 497 56.9
Atru.chr12.295 Acer truncatum HOM05D001260 ORTHO05D004134 1.2e-131 474.2 499 58.9
Atru.chr12.334 Acer truncatum HOM05D001260 ORTHO05D004134 1.6e-131 473.8 501 59.3
Sabra08G0044800 Salix brachista HOM05D001260 ORTHO05D004134 2.3e-130 469.9 497 57.5
GSVIVG01016463001 Vitis vinifera HOM05D001260 ORTHO05D004134 5.7e-129 465.3 498 57.8
Manes.10G022400 Manihot esculenta HOM05D001260 ORTHO05D004134 7.4e-129 464.9 501 58.3
RcHm_v2.0_Chr1g0368661 Rosa chinensis HOM05D001260 ORTHO05D004134 2.2e-128 463.4 493 57.4
MSTRG.259 Avicennia marina HOM05D001260 ORTHO05D004134 3.7e-128 462.6 495 57.0
CANSAT56G4350 Cannabis sativa HOM05D001260 ORTHO05D004134 7.0e-127 458.4 497 57.7
Gohir.A10G224000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.3e-125 454.1 494 57.3
Gohir.D10G237000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 8.5e-125 451.4 494 57.1
Migut.F00740 Erythranthe guttata HOM05D001260 ORTHO05D004134 7.2e-124 448.4 491 56.6
Gorai.011G270700 Gossypium raimondii HOM05D001260 ORTHO05D004134 7.2e-124 448.4 494 56.5
Thecc.10G033200 Theobroma cacao HOM05D001260 ORTHO05D004134 7.2e-124 448.4 494 56.5
Cpa.g.sc19.263 Carica papaya HOM05D001260 ORTHO05D004134 9.4e-124 448.0 495 57.0
Eucgr.J02123 Eucalyptus grandis HOM05D001260 ORTHO05D004134 4.7e-123 445.7 498 56.4
Gohir.D05G301900 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.4e-122 444.1 493 56.0
Gorai.009G320000 Gossypium raimondii HOM05D001260 ORTHO05D004134 6.7e-122 441.8 493 55.8
Manes.07G121400 Manihot esculenta HOM05D001260 ORTHO05D004134 7.4e-121 438.3 498 56.0
FAN10G0370 Fragaria x ananassa HOM05D001260 ORTHO05D004134 2.8e-120 436.4 493 55.4
Gohir.A05G302400 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.1e-119 434.5 493 54.8
Ciclev10033559m.g Citrus clementina HOM05D001260 ORTHO05D004134 1.8e-119 433.7 497 55.5
FAN03G2667 Fragaria x ananassa HOM05D001260 ORTHO05D004134 2.4e-119 433.3 493 55.6
FAN06G3528 Fragaria x ananassa HOM05D001260 ORTHO05D004134 3.1e-119 433.0 494 55.5
Nn2g13504 Nelumbo nucifera HOM05D001260 ORTHO05D004134 2.9e-117 426.4 495 54.3
CsaV3_6G001430 Cucumis sativus L. HOM05D001260 ORTHO05D004134 1.1e-116 424.5 500 55.8
Sed0004245 Sechium edule HOM05D001260 ORTHO05D004134 2.5e-116 423.3 499 54.9
Ca_05847_v3 Cicer arietinum L. HOM05D001260 ORTHO05D004134 5.5e-116 422.2 498 53.4
PGR044G1255 Punica granatum HOM05D001260 ORTHO05D004134 5.5e-116 422.2 499 55.5
FvH4_7g23510 Fragaria vesca HOM05D001260 ORTHO05D004134 9.4e-116 421.4 493 54.0
FAN06G4376 Fragaria x ananassa HOM05D001260 ORTHO05D004134 1.6e-115 420.6 493 54.0
TAR369G0466 Trochodendron aralioides HOM05D001260 ORTHO05D004134 2.1e-115 420.2 498 54.4
MD07G1205000 Malus domestica HOM05D001260 ORTHO05D004134 2.7e-115 419.9 492 54.3
MELO3C008247.2 Cucumis melo HOM05D001260 ORTHO05D004134 1.4e-114 417.5 523 53.0
Sed0007578 Sechium edule HOM05D001260 ORTHO05D004134 1.8e-114 417.2 497 53.9
MD01G1140700 Malus domestica HOM05D001260 ORTHO05D004134 5.2e-114 415.6 491 54.6
COL.COLO4_25532 Corchorus olitorius HOM05D001260 ORTHO05D004134 1.5e-113 414.1 474 53.8
VMungo0647G2094 Vigna mungo HOM05D001260 ORTHO05D004134 7.5e-113 411.8 498 52.2
CAN.G986.46 Capsicum annuum HOM05D001260 ORTHO05D004134 1.3e-112 411.0 233 100.0
Glyma.02G251500 Glycine max HOM05D001260 ORTHO05D004134 2.2e-112 410.2 498 53.6
ClCG11G006570 Citrullus lanatus HOM05D001260 ORTHO05D004134 6.3e-112 408.7 524 51.7
EL10Ac3g06309 Beta vulgaris HOM05D001260 ORTHO05D004134 8.2e-112 408.3 513 50.9
Lalb_Chr17g0346411 Lupinus albus HOM05D001260 ORTHO05D004134 8.2e-112 408.3 499 52.5
Phvul.008G230000 Phaseolus vulgaris HOM05D001260 ORTHO05D004134 2.4e-111 406.8 501 52.9
Medtr5g081240 Medicago truncatula HOM05D001260 ORTHO05D004134 4.1e-111 406.0 497 51.3
Lalb_Chr04g0250961 Lupinus albus HOM05D001260 ORTHO05D004134 1.2e-110 404.4 498 51.8
Ciclev10030832m.g Citrus clementina HOM05D001260 ORTHO05D004134 2.0e-110 403.7 530 50.8
LjContig00141g0022758 Lotus japonicus HOM05D001260 ORTHO05D004134 5.9e-110 402.1 497 51.1
Glyma.14G065300 Glycine max HOM05D001260 ORTHO05D004134 1.3e-109 401.0 499 53.1
FAN01G0960 Fragaria x ananassa HOM05D001260 ORTHO05D004134 1.7e-109 400.6 552 48.9
TAR636G2673 Trochodendron aralioides HOM05D001260 ORTHO05D004134 1.2e-107 394.4 464 52.8
Aqoxy1G00447 Aquilegia oxysepala HOM05D001260 ORTHO05D004134 3.6e-107 392.9 496 52.4
Hund12217 Selenicereus undatus HOM05D001260 ORTHO05D004134 8.0e-107 391.7 494 52.2
Lalb_Chr10g0104791 Lupinus albus HOM05D001260 ORTHO05D004134 7.5e-105 385.2 500 50.0
GSVIVG01008874001 Vitis vinifera HOM05D001260 ORTHO05D004134 7.5e-105 385.2 497 49.7
arahy.Tifrunner.gnm1.ann1.1DVI41 Arachis hypogaea HOM05D001260 ORTHO05D004134 2.0e-102 377.1 489 52.1
Lsat_1_v5_gn_8_14640 Lactuca sativa HOM05D001260 ORTHO05D004134 3.5e-102 376.3 499 52.9
Oeu001521.1 Olea europaea HOM05D001260 ORTHO05D004134 1.7e-101 374.0 488 49.2
Sc05g0005760 Simmondsia chinensis HOM05D001260 ORTHO05D004134 2.9e-101 373.2 386 57.5
CAN.G115.2 Capsicum annuum HOM05D001260 ORTHO05D004134 1.1e-100 371.3 217 88.9
ECA233G1462 Erigeron canadensis HOM05D001260 ORTHO05D004134 1.5e-100 370.9 493 48.9
AUR62030032 Chenopodium quinoa HOM05D001260 ORTHO05D004134 1.4e-98 364.4 487 48.9
arahy.Tifrunner.gnm1.ann1.TM7LMJ Arachis hypogaea HOM05D001260 ORTHO05D004134 1.8e-98 364.0 486 50.6
PSO384G2594 Papaver somniferum HOM05D001260 ORTHO05D004134 1.5e-97 360.9 498 49.0
ATR0559G059 Amborella trichopoda HOM05D001260 ORTHO05D004134 2.6e-97 360.1 508 48.4
Psat7g258880 Pisum sativum HOM05D001260 ORTHO05D004134 5.7e-97 359.0 493 48.9
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 9.8e-97 358.2 505 46.5
PSO339G0232 Papaver somniferum HOM05D001260 ORTHO05D004134 1.3e-96 357.8 498 48.0
Potri.010G197700 Populus trichocarpa HOM05D001260 ORTHO05D004134 5.9e-94 349.0 403 55.6
AUR62002609 Chenopodium quinoa HOM05D001260 ORTHO05D004134 2.3e-93 347.1 452 49.6
THA.LOC104816577 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 3.3e-92 343.2 508 46.3
Thhalv10020101m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 1.0e-90 338.2 513 45.4
Sp3g09610 Schrenkiella parvula HOM05D001260 ORTHO05D004134 2.6e-89 333.6 511 44.6
THA.LOC104826868 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 1.7e-88 330.9 508 46.1
Peaxi162Scf01064g00257 Petunia axillaris HOM05D001260 ORTHO05D004134 4.9e-88 329.3 232 75.0
AT5G05970 Arabidopsis thaliana HOM05D001260 ORTHO05D004134 6.4e-88 328.9 505 44.4
C05p56770 Brassica napus HOM05D001260 ORTHO05D004134 5.4e-87 325.9 506 46.4
BolC5t34341H Brassica oleracea HOM05D001260 ORTHO05D004134 5.4e-87 325.9 506 46.4
Thhalv10012734m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 6.0e-86 322.4 506 44.9
Sp6g36920 Schrenkiella parvula HOM05D001260 ORTHO05D004134 6.0e-86 322.4 505 45.0
Peaxi162Scf00611g00324 Petunia axillaris HOM05D001260 ORTHO05D004134 1.1e-84 318.2 188 84.6
A05p38010 Brassica napus HOM05D001260 ORTHO05D004134 1.9e-84 317.4 508 45.3
BraA05t22592Z Brassica rapa HOM05D001260 ORTHO05D004134 1.9e-84 317.4 508 45.3
Aa31LG11G7010 Aethionema arabicum HOM05D001260 ORTHO05D004134 1.8e-82 310.8 504 44.6
BcaB06g25631 Brassica carinata HOM05D001260 ORTHO05D004134 3.1e-82 310.1 505 45.3
Carub.0006s0486 Capsella rubella HOM05D001260 ORTHO05D004134 4.4e-81 306.2 516 44.2
AL6G15910 Arabidopsis lyrata HOM05D001260 ORTHO05D004134 4.9e-80 302.8 507 43.4
CARHR207240 Cardamine hirsuta HOM05D001260 ORTHO05D004134 2.4e-79 300.4 498 44.8
BcaNung07355 Brassica carinata HOM05D001260 ORTHO05D004134 4.1e-79 299.7 510 45.1
SGA_v2.0_scaffold2G01050 Striga asiatica HOM05D001260 ORTHO05D004134 2.5e-76 290.4 302 57.6
TPR.G1704 Trifolium pratense HOM05D001260 ORTHO05D004134 7.3e-76 288.9 398 51.3
Sabra10G0152200 Salix brachista HOM05D001260 ORTHO05D004134 1.2e-75 288.1 409 50.6
TPR.G25828 Trifolium pratense HOM05D001260 ORTHO05D004134 9.9e-73 278.5 385 50.6
Os09g0267500 Oryza sativa ssp. japonica HOM05D001260 ORTHO05D004134 4.1e-71 273.1 493 43.6
Rhsim08G0019600 Rhododendron simsii HOM05D001260 ORTHO05D004134 2.1e-70 270.8 468 45.1
SEGI_35518 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 3.0e-69 266.9 527 40.4
BraA10t45077Z Brassica rapa HOM05D001260 ORTHO05D004134 3.9e-69 266.5 494 41.9
SalBow6G0807 Salvia bowleyana HOM05D001260 ORTHO05D004134 1.2e-67 261.5 483 39.1
A10p30380 Brassica napus HOM05D001260 ORTHO05D004134 8.9e-66 255.4 490 42.0
Gorai.011G270500 Gossypium raimondii HOM05D001260 ORTHO05D004134 8.9e-66 255.4 335 50.1
BolC9t59841H Brassica oleracea HOM05D001260 ORTHO05D004134 3.4e-65 253.4 493 40.6
C09p70820 Brassica napus HOM05D001260 ORTHO05D004134 4.9e-64 249.6 493 40.8
Ah.13g074360 Amaranthus hybridus HOM05D001260 ORTHO05D004134 1.4e-63 248.1 262 55.3
BcaNung06227 Brassica carinata HOM05D001260 ORTHO05D004134 3.9e-61 240.0 499 37.3
MBI04_g44160_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 6.2e-59 232.6 257 53.7
Lj8A76T111 Lonicera japonica HOM05D001260 ORTHO05D004134 1.4e-58 231.5 227 58.1
Hund22801 Selenicereus undatus HOM05D001260 ORTHO05D004134 7.8e-54 215.7 310 48.7
vmacro07027 Vaccinium macrocarpon HOM05D001260 ORTHO05D004134 1.3e-53 214.9 190 63.2
Prupe.2G241200 Prunus persica HOM05D001260 ORTHO05D004134 2.4e-50 204.1 195 59.5
FvH4_7g23851 Fragaria vesca HOM05D001260 ORTHO05D004134 4.0e-50 203.4 237 54.9
SGA_v2.0_scaffold221G42704 Striga asiatica HOM05D001260 ORTHO05D004134 9.0e-50 202.2 190 58.4
SalBow6G1429 Salvia bowleyana HOM05D001260 ORTHO05D004134 1.1e-47 195.3 483 33.1
CDE01G0546 Ceratophyllum demersum HOM05D001260 ORTHO05D004134 1.5e-44 184.9 358 38.8
Oeu031370.1 Olea europaea HOM05D001260 ORTHO05D004134 3.3e-44 183.7 503 33.4
vmacro10208 Vaccinium macrocarpon HOM05D001260 ORTHO05D004134 2.8e-43 180.6 194 52.6
COL.COLO4_36753 Corchorus olitorius HOM05D001260 ORTHO05D004134 1.4e-42 178.3 325 42.8
Pp3c3_3110 Physcomitrium patens HOM05D001260 ORTHO05D004134 2.4e-42 177.6 527 34.5
AagrBONN_evm.TU.Sc2ySwM_344.891 Anthoceros agrestis HOM05D001260 ORTHO05D004134 4.5e-41 173.3 511 32.9
Mapoly0118s0019 Marchantia polymorpha HOM05D001260 ORTHO05D004134 7.6e-41 172.6 535 32.5
HPP92_020548 Vanilla planifolia HOM05D001260 ORTHO05D004134 6.4e-40 169.5 298 41.3
Pp3c13_5000 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.9e-39 167.9 532 33.5
Pp3c4_30600 Physcomitrium patens HOM05D001260 ORTHO05D004134 5.5e-39 166.4 524 34.0
Pp3c26_11450 Physcomitrium patens HOM05D001260 ORTHO05D004134 2.7e-38 164.1 528 33.5
Gorai.011G270300 Gossypium raimondii HOM05D001260 ORTHO05D004134 5.1e-37 159.8 176 56.2
SMO271G0180 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 2.8e-35 154.1 492 30.7
Thecc.10G033600 Theobroma cacao HOM05D001260 ORTHO05D004134 1.8e-29 134.8 130 61.5
unitig_37.g12012 Utricularia gibba HOM05D001260 ORTHO05D004134 2.3e-29 134.4 220 40.9
CDE04G3718 Ceratophyllum demersum HOM05D001260 ORTHO05D004134 9.7e-28 129.0 403 32.5
RcHm_v2.0_Chr4g0410231 Rosa chinensis HOM05D001260 ORTHO05D004134 2.8e-27 127.5 133 57.1
Gorai.011G270600 Gossypium raimondii HOM05D001260 ORTHO05D004134 3.1e-26 124.0 114 58.8
HPP92_020547 Vanilla planifolia HOM05D001260 ORTHO05D004134 2.2e-24 117.9 124 54.8
TPR.G35592 Trifolium pratense HOM05D001260 ORTHO05D004134 2.5e-23 114.4 112 52.7
SEGI_05272 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 4.6e-22 110.2 194 39.2
Gohir.D10G236624 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.4e-21 108.6 97 63.9
Duzib128G0118 Durio zibethinus HOM05D001260 ORTHO05D004134 1.1e-20 105.5 98 61.2
Haze_17132 Corylus avellana HOM05D001260 ORTHO05D004134 4.8e-19 100.1 103 56.3
Rhsim04G0027700 Rhododendron simsii HOM05D001260 ORTHO05D004134 5.3e-18 96.7 253 34.0
CBR_g37200 Chara braunii HOM05D001260 ORTHO05D004134 2.9e-16 90.9 611 25.0
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 5.1e-13 80.1 72 56.9
Psat2g096440 Pisum sativum HOM05D001260 ORTHO05D004134 3.3e-12 77.4 72 55.6
RcHm_v2.0_Chr4g0410241 Rosa chinensis HOM05D001260 ORTHO05D004134 4.4e-12 77.0 61 60.7
SMO169G0008 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 1.2e-09 68.9 134 35.8
Gorai.011G270200 Gossypium raimondii HOM05D001260 ORTHO05D004134 3.5e-09 67.4 52 71.2
RcHm_v2.0_Chr4g0410221 Rosa chinensis HOM05D001260 ORTHO05D004134 3.5e-09 67.4 49 67.3
RcHm_v2.0_Chr1g0315431 Rosa chinensis HOM05D001260 ORTHO05D004134 8.5e-08 62.8 89 47.2
RcHm_v2.0_Chr1g0324411 Rosa chinensis HOM05D001260 ORTHO05D004134 8.5e-08 62.8 89 47.2
RcHm_v2.0_Chr1g0369591 Rosa chinensis HOM05D001260 ORTHO05D004134 3.2e-07 60.8 89 46.1


User provided reference genes

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