Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 6.6e-149 531.2 377 100.0
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 4.3e-124 448.7 376 84.8
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 5.2e-122 441.8 371 84.6
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.6e-121 439.5 366 85.5
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 4.2e-119 432.2 379 84.4
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 3.3e-116 422.5 335 88.4
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 2.1e-115 419.9 373 81.8
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 2.1e-99 366.7 375 74.9
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 7.6e-97 358.2 379 76.0
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.3e-96 357.5 369 77.2
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.3e-96 357.5 369 77.2
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 1.2e-94 350.9 343 75.8
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 3.5e-94 349.4 386 76.4
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 3.0e-93 346.3 348 77.0
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 3.9e-93 345.9 364 73.1
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 1.9e-92 343.6 364 72.3
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 1.3e-91 340.9 368 58.4
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 2.8e-91 339.7 367 73.3
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.1e-90 337.8 366 73.2
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 3.1e-90 336.3 367 74.9
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 5.3e-90 335.5 366 73.2
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 6.9e-90 335.1 393 58.0
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.2e-89 334.3 383 70.8
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 2.0e-89 333.6 365 56.7
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.0e-89 333.6 366 73.2
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 2.0e-89 333.6 366 73.0
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 3.4e-89 332.8 366 72.1
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 3.4e-89 332.8 381 71.7
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.0e-88 331.3 366 72.1
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.8e-88 329.3 374 72.2
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 5.0e-88 328.9 343 79.6
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 5.0e-88 328.9 380 70.0
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 6.5e-88 328.6 358 74.0
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 6.5e-88 328.6 380 62.1
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 8.5e-88 328.2 378 70.6
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 8.5e-88 328.2 374 73.5
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.1e-87 327.8 378 70.4
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 1.9e-87 327.0 380 69.5
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 2.5e-87 326.6 376 60.6
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 4.2e-87 325.9 367 70.6
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 4.2e-87 325.9 379 69.7
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.2e-86 324.3 365 69.6
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 2.7e-86 323.2 379 62.5
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.8e-85 320.5 365 70.7
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 3.9e-85 319.3 380 68.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 3.9e-85 319.3 370 73.5
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.5e-84 317.4 368 69.8
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.9e-84 317.0 401 66.1
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 2.5e-84 316.6 382 67.3
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 3.3e-84 316.2 366 69.9
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 9.7e-84 314.7 377 70.0
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.3e-83 314.3 374 70.6
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 4.8e-83 312.4 365 68.8
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 6.3e-83 312.0 366 71.6
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 4.1e-82 309.3 377 71.6
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.5e-81 307.4 377 69.2
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 2.6e-81 306.6 377 70.6
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 4.5e-81 305.8 376 66.8
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 2.9e-80 303.1 366 66.9
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.1e-79 301.2 369 68.6
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 2.5e-79 300.1 382 67.0
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 2.5e-79 300.1 360 70.6
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.0e-77 294.7 373 68.1
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 3.0e-77 293.1 360 70.0
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.1e-77 292.4 361 70.6
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 6.7e-77 292.0 172 90.1
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 3.3e-76 289.7 384 68.8
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 3.3e-76 289.7 384 68.8
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 3.3e-76 289.7 384 68.8
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 2.2e-75 287.0 375 69.6
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 3.1e-74 283.1 491 39.3
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 3.1e-74 283.1 368 68.2
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 9.1e-74 281.6 381 65.4
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 1.5e-73 280.8 375 69.1
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.3e-72 277.7 361 70.6
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 3.8e-72 276.2 377 63.4
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.9e-71 273.9 371 67.7
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 5.5e-71 272.3 371 67.4
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 2.1e-70 270.4 349 68.2
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 4.7e-70 269.2 338 68.9
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 7.9e-70 268.5 365 65.8
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 1.4e-69 267.7 338 69.2
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 2.3e-69 266.9 368 65.2
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.0e-69 266.5 378 64.0
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 3.9e-69 266.2 382 66.8
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.5e-68 264.2 365 67.9
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 2.0e-68 263.8 171 77.2
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 3.3e-68 263.1 365 66.8
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 4.8e-67 259.2 372 62.9
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 8.2e-67 258.5 278 79.1
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 8.2e-67 258.5 366 66.7
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.4e-66 257.7 381 62.7
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 3.1e-66 256.5 370 66.5
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 5.3e-66 255.8 381 62.7
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 7.0e-66 255.4 374 42.8
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 2.5e-63 246.9 384 61.2
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.5e-63 246.9 364 62.1
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 3.2e-63 246.5 371 61.7
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 5.5e-63 245.7 335 67.8
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 3.6e-62 243.0 296 75.7
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 4.7e-62 242.7 311 69.5
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 2.3e-61 240.4 305 71.5
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 6.7e-61 238.8 399 50.1
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 8.8e-61 238.4 324 56.2
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 4.4e-60 236.1 386 60.9
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 9.1e-58 228.4 385 48.6
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 6.5e-56 222.2 267 70.8
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 6.8e-53 212.2 382 58.9
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 7.5e-52 208.8 306 66.7
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 8.3e-51 205.3 384 58.1
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.0e-48 198.4 317 65.3
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.9e-47 194.1 360 57.8
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.8e-45 187.6 318 62.6
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 3.4e-44 183.3 309 61.8
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 5.7e-44 182.6 132 81.1
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 9.8e-44 181.8 132 80.3
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.1e-42 176.8 378 50.5
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 7.0e-42 175.6 184 53.8
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 9.2e-42 175.3 182 59.3
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 2.0e-41 174.1 359 54.6
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 2.3e-40 170.6 132 78.0
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.2e-38 164.9 349 54.7
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 4.7e-38 162.9 267 65.2
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 5.2e-37 159.5 297 60.6
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 3.9e-32 143.3 151 50.3
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 4.7e-30 136.3 318 56.3
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.0e-28 131.0 133 63.9
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 2.6e-28 130.6 115 69.6
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 2.9e-27 127.1 359 49.9
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.9e-23 114.4 299 55.2
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 4.7e-22 109.8 243 61.7
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 8.9e-21 105.5 95 57.9
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 3.2e-18 97.1 225 55.6
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 8.6e-16 89.0 84 76.2
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 8.1e-14 82.4 59 67.8
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 5.2e-13 79.7 55 70.9
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 2.6e-12 77.4 55 69.1


User provided reference genes

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