Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 5006.0 2544 100.0
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 4323.1 2550 86.8
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 3963.7 2557 79.9
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 3377.0 2238 78.3
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 3373.9 1986 86.3
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 2660.6 1690 80.5
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2494.2 2609 52.6
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2473.4 2617 52.1
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 2382.1 2572 51.1
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 2291.2 2565 49.6
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2179.8 2707 46.8
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2165.6 2633 47.2
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 2161.7 2725 46.6
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 2156.7 2580 47.1
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 2152.9 2583 47.4
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 2135.1 2638 46.4
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2134.0 2573 48.0
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2125.9 2597 47.1
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2113.6 2591 47.1
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2109.3 2643 46.6
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2109.0 2591 46.9
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 2099.3 2582 47.1
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2040.0 2585 46.1
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2020.0 2585 45.5
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2009.6 2648 45.6
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2007.3 2584 45.4
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1994.2 2602 44.8
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1970.3 2638 44.4
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1964.9 2595 44.2
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1954.1 2615 44.3
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1937.9 2598 45.2
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1926.4 2595 43.6
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1926.4 2603 44.6
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1912.9 2578 43.2
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1911.0 2589 43.8
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1898.6 2619 43.6
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1892.9 2551 44.6
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1871.3 2560 43.2
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1854.3 2582 42.3
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1847.8 2370 44.8
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1834.3 2528 43.6
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1823.5 2589 42.7
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1817.0 2334 45.1
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1795.0 2586 42.0
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1792.7 2608 41.0
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1788.5 2515 43.8
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1778.8 2646 41.5
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1778.8 2573 41.4
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1778.1 2222 45.7
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1775.8 2604 41.8
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1764.2 2598 41.0
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1760.7 2568 42.0
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1756.9 2565 41.6
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1748.4 2640 40.5
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1747.3 2603 41.4
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1744.9 2572 41.3
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1744.6 2586 40.6
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1743.8 2597 41.5
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1738.4 2600 40.3
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1732.6 2596 40.2
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1731.1 2658 40.7
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1730.7 2565 41.0
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1728.8 2651 40.7
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1708.0 2604 40.7
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1696.8 2670 40.6
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1691.0 2575 40.3
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1680.2 2592 40.5
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1676.8 2569 40.2
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1674.1 2560 41.2
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1662.5 2590 40.8
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1644.4 2533 41.1
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1587.8 2626 39.3
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1557.3 2016 44.9
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1551.2 2590 38.7
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1530.0 2562 39.0
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1506.1 2658 38.3
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1497.3 2452 38.7
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1475.3 2529 38.7
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1459.5 2623 37.7
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1456.0 2639 37.8
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1440.6 2658 37.0
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1438.7 2672 37.3
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1416.4 2642 35.8
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1395.6 2587 36.8
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1395.6 2132 40.4
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1364.4 1772 45.8
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1353.2 2327 36.5
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1342.8 2590 36.5
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1315.4 2561 35.8
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1280.8 2584 35.5
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1238.4 2019 37.3
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1233.8 2251 37.1
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1177.9 1789 41.5
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1174.1 1744 40.8
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1114.8 2084 35.8
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1104.7 2226 35.5
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 7.0e-295 1018.8 2465 32.5
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 8.4e-264 915.6 911 53.9
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 2.9e-240 837.4 769 58.6
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 2.5e-228 797.7 2763 27.6
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.7e-200 705.3 817 48.1
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 4.2e-199 700.7 2736 25.4
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 7.7e-193 679.9 2540 26.3
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 9.5e-183 646.4 565 61.8
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.1e-178 632.9 1145 37.0
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 9.8e-172 609.8 2760 26.0
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 2.3e-168 598.6 606 54.1
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 6.8e-165 587.0 2558 26.1
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 9.5e-159 566.6 1242 33.8
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 8.3e-155 553.5 1117 34.6
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.9e-146 525.8 614 49.8
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.1e-143 516.5 1131 34.5
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 5.3e-133 481.1 749 41.3
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.0e-132 479.2 761 40.6
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.4e-130 473.0 893 33.9
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 6.7e-128 464.2 555 47.4
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.7e-123 449.5 422 55.5
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.2e-121 443.4 645 44.3
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 2.4e-117 429.1 537 44.7
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.0e-99 370.5 714 36.4
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.2e-94 352.8 485 40.8
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.8e-86 325.1 475 44.6
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.8e-85 323.2 861 31.9
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 5.5e-82 311.6 337 54.6
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 1.2e-76 293.9 303 55.4
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 3.8e-75 288.9 395 44.8
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 2.3e-51 209.9 177 58.2
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 3.9e-51 209.1 347 37.5
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 3.1e-48 199.5 441 32.7
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.2e-47 197.6 187 61.5
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 4.6e-44 185.7 356 32.9
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.0e-43 183.0 495 29.7
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.2e-40 172.2 325 34.2
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 3.2e-37 162.9 244 41.4
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 4.1e-37 162.5 233 42.9
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.3e-34 151.8 277 36.8
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.6e-33 150.6 172 47.1
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 2.1e-28 133.7 205 41.5
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 2.7e-28 133.3 140 48.6
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 3.9e-27 129.4 121 53.7
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 1.3e-25 124.4 347 29.7
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.6e-25 124.0 149 43.6
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 8.1e-25 121.7 164 41.5
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.8e-24 120.6 244 35.7
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.0e-23 117.1 72 80.6
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 3.4e-23 116.3 121 51.2
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 3.5e-20 106.3 116 51.7
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.3e-19 103.6 246 31.3
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 2.5e-18 100.1 79 62.0
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 5.6e-18 99.0 138 39.9
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 2.8e-17 96.7 167 35.9
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 4.0e-16 92.8 400 23.2
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.5e-15 89.4 409 23.5
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 1.3e-14 87.8 145 38.6
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.8e-14 86.3 335 25.4
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.8e-14 86.3 335 25.4
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 6.4e-14 85.5 333 25.5
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 3.5e-12 79.7 64 59.4
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 7.9e-12 78.6 134 32.1
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.3e-11 77.8 370 23.5
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 1.3e-11 77.8 78 56.4
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.3e-11 77.8 189 33.9
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 3.0e-11 76.6 67 52.2
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 1.9e-10 73.9 107 40.2
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 7.4e-10 72.0 130 32.3
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.6e-09 70.9 225 27.6
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 6.2e-09 68.9 81 53.1
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 4.0e-08 66.2 112 34.8
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 3.4e-07 63.2 62 51.6


User provided reference genes

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