Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 9.3e-25 115.9 53 100.0
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 9.3e-25 115.9 53 100.0
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 2.3e-23 111.3 53 94.3
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 2.3e-23 111.3 53 94.3
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 3.3e-22 107.5 53 96.2
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.3e-22 107.5 53 96.2
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.3e-22 107.5 53 96.2
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.3e-22 107.5 53 96.2
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.3e-22 107.5 53 96.2
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 3.3e-22 107.5 53 92.5
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 3.3e-22 107.5 53 96.2
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.3e-22 107.5 53 96.2
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.3e-21 105.5 53 94.3
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 1.3e-21 105.5 53 94.3
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 1.3e-21 105.5 53 94.3
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 1.3e-21 105.5 53 94.3
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 1.3e-21 105.5 53 94.3
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 1.3e-21 105.5 53 94.3
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 1.3e-21 105.5 53 94.3
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.3e-21 105.5 53 90.6
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 1.3e-21 105.5 53 94.3
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 1.3e-21 105.5 53 94.3
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 1.6e-21 105.1 53 92.5
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 1.6e-21 105.1 53 94.3
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 2.8e-21 104.4 49 95.9
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 2.8e-21 104.4 53 94.3
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 2.8e-21 104.4 53 92.5
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 2.8e-21 104.4 53 92.5
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 3.6e-21 104.0 53 86.8
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 3.6e-21 104.0 46 100.0
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 3.6e-21 104.0 49 91.8
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 6.2e-21 103.2 53 92.5
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 6.2e-21 103.2 53 92.5
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 84.9
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 88.7
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 88.7
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 88.7
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 88.7
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 88.7
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 88.7
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 88.7
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 88.7
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 92.5
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 92.5
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 92.5
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 92.5
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 92.5
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 92.5
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 92.5
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 8.1e-21 102.8 49 91.8
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 88.7
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 88.7
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 8.1e-21 102.8 53 92.5
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.1e-20 102.4 53 92.5
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.1e-20 102.4 53 92.5
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 1.1e-20 102.4 53 92.5
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.1e-20 102.4 53 88.7
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.1e-20 102.4 53 94.3
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.4e-20 102.1 45 100.0
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 2.4e-20 101.3 49 91.8
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 3.1e-20 100.9 53 83.0
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 3.1e-20 100.9 53 90.6
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 3.1e-20 100.9 52 90.4
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 4.0e-20 100.5 53 88.7
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 4.0e-20 100.5 53 90.6
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 4.0e-20 100.5 53 90.6
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 4.0e-20 100.5 47 95.7
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 5.3e-20 100.1 53 86.8
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 5.3e-20 100.1 49 87.8
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 6.9e-20 99.8 53 86.8
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.2e-19 99.0 48 95.8
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.5e-19 98.6 49 87.8
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 2.0e-19 98.2 53 90.6
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 2.0e-19 98.2 49 91.8
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 2.6e-19 97.8 53 84.9
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 2.6e-19 97.8 53 84.9
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 3.4e-19 97.4 53 84.9
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 3.4e-19 97.4 53 86.8
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 4.5e-19 97.1 53 86.8
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 4.5e-19 97.1 53 88.7
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 9.9e-19 95.9 50 88.0
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 1.3e-18 95.5 54 85.2
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 1.7e-18 95.1 53 86.8
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 1.7e-18 95.1 53 86.8
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 2.2e-18 94.7 47 93.6
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.2e-18 94.7 52 84.6
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 3.8e-18 94.0 45 95.6
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 3.8e-18 94.0 47 91.5
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 3.8e-18 94.0 45 95.6
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 3.8e-18 94.0 45 95.6
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 3.8e-18 94.0 45 95.6
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 3.8e-18 94.0 45 95.6
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 4.9e-18 93.6 51 80.4
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 4.9e-18 93.6 45 93.3
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 6.4e-18 93.2 47 89.4
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 6.4e-18 93.2 47 89.4
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 6.4e-18 93.2 47 89.4
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 1.1e-17 92.4 47 89.4
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 1.1e-17 92.4 47 91.5
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 1.4e-17 92.0 45 93.3
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 1.4e-17 92.0 45 93.3
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 1.9e-17 91.7 42 95.2
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.4e-17 91.3 47 78.7
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.4e-17 91.3 47 78.7
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 3.2e-17 90.9 45 93.3
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 3.2e-17 90.9 46 91.3
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 3.2e-17 90.9 53 81.1
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 3.2e-17 90.9 53 81.1
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 4.2e-17 90.5 47 89.4
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 5.4e-17 90.1 54 79.6
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 5.4e-17 90.1 54 79.6
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 7.1e-17 89.7 45 88.9
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 7.1e-17 89.7 45 88.9
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 7.1e-17 89.7 45 88.9
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 7.1e-17 89.7 45 88.9
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 9.3e-17 89.4 43 88.4
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 1.2e-16 89.0 45 91.1
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.6e-16 88.6 45 86.7
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.1e-16 88.2 46 89.1
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 3.5e-16 87.4 45 86.7
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 4.6e-16 87.0 45 84.4
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 6.0e-16 86.7 41 95.1
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 7.9e-16 86.3 45 86.7
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 1.0e-15 85.9 41 90.2
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.3e-15 85.5 54 75.9
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.8e-15 85.1 47 76.6
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 3.0e-15 84.3 43 86.0
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 3.9e-15 84.0 43 86.0
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 5.1e-15 83.6 68 64.7
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 5.1e-15 83.6 47 83.0
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 5.1e-15 83.6 47 83.0
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 1.1e-14 82.4 45 77.8
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.1e-14 82.4 49 77.6
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 1.1e-14 82.4 41 87.8
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.5e-14 82.0 53 69.8
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 3.3e-14 80.9 38 92.1
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 4.3e-14 80.5 43 74.4
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 4.3e-14 80.5 45 82.2
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 2.1e-13 78.2 53 69.8
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 6.2e-13 76.6 43 81.4
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 6.2e-13 76.6 67 61.2
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.8e-12 75.1 39 79.5
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 1.8e-12 75.1 85 50.6
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 3.1e-12 74.3 54 64.8
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 9.0e-12 72.8 41 73.2
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 9.0e-12 72.8 35 88.6
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 3.4e-11 70.9 34 88.2
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 1.7e-10 68.6 42 66.7
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 4.9e-10 67.0 84 50.0
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 1.1e-09 65.9 43 60.5
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 3.2e-09 64.3 31 90.3
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 3.2e-09 64.3 31 90.3
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 3.2e-09 64.3 50 54.0
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 3.2e-09 64.3 50 54.0
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 3.2e-09 64.3 50 54.0
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 5.5e-09 63.5 33 81.8
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 5.5e-09 63.5 43 60.5
arahy.Tifrunner.gnm1.ann1.H77AQF Arachis hypogaea HOM05D004494 ORTHO05D005493 1.5e-06 55.5 25 96.0
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.5e-06 54.7 42 52.4


User provided reference genes

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