Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.2e-164 583.2 301 100.0
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 6.6e-152 540.8 297 92.6
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 6.6e-152 540.8 297 92.6
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 4.4e-148 528.1 301 89.0
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 3.2e-122 442.2 303 75.6
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 3.9e-120 435.3 304 76.3
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 1.5e-119 433.3 234 91.9
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 3.3e-119 432.2 340 69.4
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 5.7e-119 431.4 300 75.0
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.3e-118 430.3 297 76.4
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 2.2e-118 429.5 300 74.7
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 9.0e-117 424.1 299 74.9
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 9.0e-117 424.1 246 88.6
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 3.4e-116 422.2 296 74.3
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 5.9e-116 421.4 307 73.0
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.0e-115 420.6 297 74.7
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 5.0e-115 418.3 300 74.7
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 1.4e-114 416.8 302 72.5
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 1.9e-114 416.4 298 73.5
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 2.5e-114 416.0 300 74.0
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 2.5e-114 416.0 298 74.2
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.6e-113 413.3 299 75.6
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 1.6e-113 413.3 300 72.7
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 4.6e-113 411.8 304 72.0
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 7.9e-113 411.0 297 72.7
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 1.4e-112 410.2 298 72.8
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 1.8e-112 409.8 298 71.5
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 3.0e-112 409.1 317 70.7
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 3.9e-112 408.7 299 72.2
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 5.1e-112 408.3 317 70.7
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 5.1e-112 408.3 299 74.2
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 1.5e-111 406.8 307 72.3
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 1.5e-111 406.8 300 72.3
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 3.3e-111 405.6 299 73.2
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 4.3e-111 405.2 296 72.6
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 4.3e-111 405.2 298 72.1
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 9.7e-111 404.1 299 72.9
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 9.7e-111 404.1 299 72.9
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 9.7e-111 404.1 306 69.9
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 1.3e-110 403.7 299 72.9
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 2.2e-110 402.9 301 70.8
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 2.8e-110 402.5 301 71.1
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 3.7e-110 402.1 308 71.4
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 4.8e-110 401.7 299 72.9
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 6.3e-110 401.4 308 71.4
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 1.4e-109 400.2 299 72.6
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 2.4e-109 399.4 298 72.1
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 3.1e-109 399.1 301 72.1
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 5.3e-109 398.3 299 70.9
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 6.9e-109 397.9 299 72.6
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 6.9e-109 397.9 301 71.4
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 1.2e-108 397.1 293 70.0
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 2.0e-108 396.4 300 68.7
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 2.0e-108 396.4 301 71.4
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 3.4e-108 395.6 300 71.0
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 3.4e-108 395.6 300 69.3
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.4e-108 395.6 300 68.7
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 2.2e-107 392.9 304 70.4
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.2e-107 392.9 304 71.1
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 3.8e-107 392.1 304 69.4
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 6.5e-107 391.3 312 68.9
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 1.9e-106 389.8 309 71.5
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 9.4e-106 387.5 317 67.5
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.6e-105 386.7 299 69.9
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 1.6e-105 386.7 334 66.2
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 3.6e-105 385.6 362 59.7
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 1.4e-104 383.6 352 62.2
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 1.1e-103 380.6 300 70.0
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 1.1e-103 380.6 300 70.0
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 7.4e-103 377.9 304 70.4
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 3.7e-102 375.6 307 68.7
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 8.2e-102 374.4 318 65.7
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 8.2e-102 374.4 271 73.8
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 1.8e-101 373.2 287 71.1
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 2.0e-100 369.8 330 65.5
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.8e-99 365.5 368 56.0
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 6.5e-99 364.8 257 75.9
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 6.5e-99 364.8 283 70.3
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.9e-98 363.2 281 71.5
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 6.1e-97 358.2 277 71.5
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 2.0e-95 353.2 297 67.3
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 4.4e-95 352.1 292 65.4
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 7.4e-95 351.3 326 60.4
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 7.4e-95 351.3 332 58.7
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 1.3e-94 350.5 308 64.6
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 4.8e-94 348.6 300 66.3
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 4.8e-94 348.6 256 73.8
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 4.5e-92 342.0 254 71.7
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 1.9e-90 336.7 260 69.2
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 2.5e-90 336.3 260 69.2
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.5e-90 336.3 369 53.9
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 1.0e-88 330.9 256 71.5
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 1.8e-88 330.1 253 70.4
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 2.3e-88 329.7 291 62.5
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 4.0e-88 328.9 310 62.6
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 6.7e-88 328.2 253 70.0
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 2.4e-85 319.7 283 63.6
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 5.3e-85 318.5 205 77.6
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.3e-83 313.9 212 75.5
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 2.2e-83 313.2 258 68.2
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 3.8e-83 312.4 212 76.9
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 5.0e-83 312.0 322 55.0
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.4e-80 303.9 253 65.6
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 3.0e-80 302.8 254 65.0
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 6.8e-80 301.6 253 67.2
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.3e-78 297.4 184 83.2
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 4.8e-78 295.4 325 52.9
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 8.3e-78 294.7 245 69.0
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.8e-77 293.5 300 57.3
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 4.5e-76 288.9 229 67.7
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 1.3e-75 287.3 297 54.2
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 1.5e-74 283.9 271 61.6
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 5.5e-74 282.0 242 65.3
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 1.2e-68 264.2 199 68.8
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.6e-68 263.8 292 53.4
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.3e-67 260.8 290 53.4
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.9e-66 256.9 223 61.0
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 1.8e-64 250.4 165 76.4
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 3.4e-63 246.1 207 65.7
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 5.8e-63 245.4 342 46.2
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.2e-62 243.4 279 52.3
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 2.7e-60 236.5 156 78.8
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 4.1e-53 212.6 156 71.8
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 9.5e-50 201.4 130 80.0
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 2.1e-28 130.6 121 59.5
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 1.3e-27 127.9 331 33.8
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 5.3e-24 115.9 301 29.6
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 1.9e-18 97.4 75 73.3
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 1.8e-16 90.9 329 28.0
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 7.1e-13 79.0 86 48.8
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 3.0e-11 73.6 71 59.2
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.1e-10 71.6 52 71.2
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 3.7e-09 66.6 51 66.7
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 3.4e-07 60.1 72 51.4


User provided reference genes

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