Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G834.10 Capsicum annuum HOM05D004650 ORTHO05D005715 1.3e-180 636.3 344 100.0
Sopen01g052180 Solanum pennellii HOM05D004650 ORTHO05D005715 6.4e-42 175.6 333 40.8
Nitab4.5_0009512g0020 Nicotiana tabacum HOM05D004650 ORTHO05D005715 5.1e-39 166.0 339 42.5
Nitab4.5_0003234g0030 Nicotiana tabacum HOM05D004650 ORTHO05D005715 1.8e-36 157.5 298 40.3
CAN.G98.11 Capsicum annuum HOM05D004650 ORTHO05D005715 1.6e-24 117.9 108 63.9
ECA236G4812 Erigeron canadensis HOM05D004650 ORTHO05D005715 7.4e-22 109.0 253 35.6
Lsat_1_v5_gn_7_91680 Lactuca sativa HOM05D004650 ORTHO05D005715 9.6e-22 108.6 247 34.8
CSS0049841 Camellia sinensis var. sinensis HOM05D004650 ORTHO05D005715 2.1e-21 107.5 310 31.6
CAN.G660.34 Capsicum annuum HOM05D002907 ORTHO05D005554 1.2e-19 101.7 64 79.7
Cfa005063 Carpinus fangiana HOM05D004650 ORTHO05D005715 1.5e-19 101.3 87 62.1
Lsat_1_v5_gn_6_14381 Lactuca sativa HOM05D004650 ORTHO05D005715 2.0e-19 100.9 146 43.2
Potri.009G120900 Populus trichocarpa HOM05D004650 ORTHO05D005715 3.4e-19 100.1 122 49.2
arahy.Tifrunner.gnm1.ann1.EM89X0 Arachis hypogaea HOM05D004650 ORTHO05D005715 4.5e-19 99.8 94 57.4
arahy.Tifrunner.gnm1.ann1.JDK4IY Arachis hypogaea HOM05D004650 ORTHO05D005715 4.5e-19 99.8 94 57.4
MELO3C013443.2 Cucumis melo HOM05D004650 ORTHO05D005715 4.5e-19 99.8 87 58.6
Cc02_g17180 Coffea canephora HOM05D004650 ORTHO05D005715 5.8e-19 99.4 80 67.5
Lj5C193G19 Lonicera japonica HOM05D004650 ORTHO05D005715 5.8e-19 99.4 122 49.2
Ciclev10027768m.g Citrus clementina HOM05D004650 ORTHO05D005715 7.6e-19 99.0 77 64.9
Haze_02320 Corylus avellana HOM05D004650 ORTHO05D005715 7.6e-19 99.0 87 60.9
HanXRQChr16g0505091 Helianthus annuus HOM05D004650 ORTHO05D005715 7.6e-19 99.0 154 42.2
ClCG02G004760 Citrullus lanatus HOM05D004650 ORTHO05D005715 9.9e-19 98.6 87 57.5
VMungo1127G0931 Vigna mungo HOM05D004650 ORTHO05D005715 9.9e-19 98.6 298 30.5
Glyma.13G201700 Glycine max HOM05D004650 ORTHO05D005715 1.3e-18 98.2 98 56.1
Manes.04G086301 Manihot esculenta HOM05D004650 ORTHO05D005715 1.7e-18 97.8 122 47.5
Phvul.011G210900 Phaseolus vulgaris HOM05D004650 ORTHO05D005715 1.7e-18 97.8 126 46.0
Sabra09G0093300 Salix brachista HOM05D004650 ORTHO05D005715 1.7e-18 97.8 73 71.2
Sc08g0000680 Simmondsia chinensis HOM05D004650 ORTHO05D005715 1.7e-18 97.8 80 65.0
Eucgr.I01295 Eucalyptus grandis HOM05D004650 ORTHO05D005715 2.2e-18 97.4 86 60.5
Lj1g0020880 Lotus japonicus HOM05D004650 ORTHO05D005715 2.2e-18 97.4 98 56.1
DCAR_023026 Daucus carota HOM05D004650 ORTHO05D005715 2.9e-18 97.1 86 59.3
Actinidia11754 Actinidia chinensis HOM05D004650 ORTHO05D005715 3.8e-18 96.7 80 61.2
Ca_23900_v3 Cicer arietinum L. HOM05D004650 ORTHO05D005715 3.8e-18 96.7 175 37.7
MD05G1059700 Malus domestica HOM05D004650 ORTHO05D005715 3.8e-18 96.7 117 48.7
TAR633G2180 Trochodendron aralioides HOM05D004650 ORTHO05D005715 3.8e-18 96.7 90 58.9
MSTRG.5411 Avicennia marina HOM05D004650 ORTHO05D005715 4.9e-18 96.3 98 55.1
CsaV3_7G000160 Cucumis sativus L. HOM05D004650 ORTHO05D005715 4.9e-18 96.3 96 54.2
Cpa.g.sc150.59 Carica papaya HOM05D004650 ORTHO05D005715 6.4e-18 95.9 87 58.6
Thecc.02G079400 Theobroma cacao HOM05D004650 ORTHO05D005715 6.4e-18 95.9 123 46.3
Nn5g29730 Nelumbo nucifera HOM05D004650 ORTHO05D005715 8.4e-18 95.5 80 65.0
SGA_v2.0_scaffold122G33210 Striga asiatica HOM05D004650 ORTHO05D005715 8.4e-18 95.5 127 46.5
Lalb_Chr19g0132251 Lupinus albus HOM05D004650 ORTHO05D005715 1.1e-17 95.1 87 58.6
Psat2g040720 Pisum sativum HOM05D004650 ORTHO05D005715 1.1e-17 95.1 212 34.0
GSVIVG01024222001 Vitis vinifera HOM05D004650 ORTHO05D005715 1.1e-17 95.1 73 69.9
FAN10G1385 Fragaria x ananassa HOM05D004650 ORTHO05D005715 1.4e-17 94.7 122 45.1
Lalb_Chr03g0034141 Lupinus albus HOM05D004650 ORTHO05D005715 2.4e-17 94.0 87 57.5
COL.COLO4_26001 Corchorus olitorius HOM05D004650 ORTHO05D005715 3.2e-17 93.6 123 45.5
FvH4_2g09800 Fragaria vesca HOM05D004650 ORTHO05D005715 3.2e-17 93.6 122 45.1
FAN15G0405 Fragaria x ananassa HOM05D004650 ORTHO05D005715 3.2e-17 93.6 122 45.1
RcHm_v2.0_Chr6g0266121 Rosa chinensis HOM05D004650 ORTHO05D005715 3.2e-17 93.6 122 45.1
FvH4_7g12280 Fragaria vesca HOM05D004650 ORTHO05D005715 4.2e-17 93.2 122 45.1
FAN20G2064 Fragaria x ananassa HOM05D004650 ORTHO05D005715 5.5e-17 92.8 87 55.2
Gohir.D13G029900 Gossypium hirsutum HOM05D004650 ORTHO05D005715 7.1e-17 92.4 77 63.6
Gorai.013G034200 Gossypium raimondii HOM05D004650 ORTHO05D005715 7.1e-17 92.4 77 63.6
CiPaw.06G132000 Carya illinoinensis HOM05D004650 ORTHO05D005715 9.3e-17 92.0 87 59.8
AUR62015438 Chenopodium quinoa HOM05D004650 ORTHO05D005715 9.3e-17 92.0 122 44.3
FAN24G0050 Fragaria x ananassa HOM05D004650 ORTHO05D005715 9.3e-17 92.0 122 44.3
FAN27G3342 Fragaria x ananassa HOM05D004650 ORTHO05D005715 9.3e-17 92.0 122 44.3
PSO675G4364 Papaver somniferum HOM05D004650 ORTHO05D005715 9.3e-17 92.0 80 60.0
Hund11840 Selenicereus undatus HOM05D004650 ORTHO05D005715 9.3e-17 92.0 276 30.8
FAN10G4111 Fragaria x ananassa HOM05D004650 ORTHO05D005715 1.2e-16 91.7 122 44.3
Rhsim11G0181000 Rhododendron simsii HOM05D004650 ORTHO05D005715 1.2e-16 91.7 331 29.6
Aqoxy4G02770 Aquilegia oxysepala HOM05D004650 ORTHO05D005715 2.1e-16 90.9 90 56.7
Glyma.12G236300 Glycine max HOM05D004650 ORTHO05D005715 2.1e-16 90.9 290 31.4
Gohir.A13G019000 Gossypium hirsutum HOM05D004650 ORTHO05D005715 2.1e-16 90.9 77 63.6
PSO541G1340 Papaver somniferum HOM05D004650 ORTHO05D005715 2.1e-16 90.9 80 60.0
CANSAT11G1974 Cannabis sativa HOM05D004650 ORTHO05D005715 2.7e-16 90.5 87 55.2
MD10G1067900 Malus domestica HOM05D004650 ORTHO05D005715 2.7e-16 90.5 274 31.0
PGR142G2793 Punica granatum HOM05D004650 ORTHO05D005715 3.5e-16 90.1 87 55.2
Aqoxy5G01524 Aquilegia oxysepala HOM05D004650 ORTHO05D005715 4.6e-16 89.7 87 55.2
Medtr1g080390 Medicago truncatula HOM05D004650 ORTHO05D005715 4.6e-16 89.7 215 33.5
Atru.chr5.3088 Acer truncatum HOM05D004650 ORTHO05D005715 6.0e-16 89.4 87 55.2
AUR62002225 Chenopodium quinoa HOM05D004650 ORTHO05D005715 7.9e-16 89.0 79 58.2
Migut.G00750 Erythranthe guttata HOM05D004650 ORTHO05D005715 7.9e-16 89.0 77 59.7
Oeu050697.1 Olea europaea HOM05D004650 ORTHO05D005715 1.3e-15 88.2 126 46.0
Aa31LG3G140 Aethionema arabicum HOM05D004650 ORTHO05D005715 1.8e-15 87.8 87 52.9
SalBow3G4209 Salvia bowleyana HOM05D004650 ORTHO05D005715 1.8e-15 87.8 87 54.0
TPR.G3476 Trifolium pratense HOM05D004650 ORTHO05D005715 3.0e-15 87.0 308 29.9
BraA04t17255Z Brassica rapa HOM05D004650 ORTHO05D005715 1.5e-14 84.7 87 52.9
Sed0015033 Sechium edule HOM05D004650 ORTHO05D005715 1.5e-14 84.7 87 49.4
BcaC07g41146 Brassica carinata HOM05D004650 ORTHO05D005715 1.9e-14 84.3 87 52.9
A09p58230 Brassica napus HOM05D004650 ORTHO05D005715 1.9e-14 84.3 87 52.9
C08p41530 Brassica napus HOM05D004650 ORTHO05D005715 1.9e-14 84.3 87 52.9
BolC8t51714H Brassica oleracea HOM05D004650 ORTHO05D005715 1.9e-14 84.3 87 52.9
BraA09t41211Z Brassica rapa HOM05D004650 ORTHO05D005715 1.9e-14 84.3 87 52.9
Sp4g00610 Schrenkiella parvula HOM05D004650 ORTHO05D005715 1.9e-14 84.3 87 52.9
THA.LOC104806024 Tarenaya hassleriana HOM05D004650 ORTHO05D005715 1.9e-14 84.3 125 44.0
QL11p045374 Quercus lobata HOM05D004650 ORTHO05D005715 2.5e-14 84.0 122 44.3
ATR0564G425 Amborella trichopoda HOM05D004650 ORTHO05D005715 3.3e-14 83.6 80 56.2
MBI03_g33031_MAGBIO Magnolia biondii HOM05D004650 ORTHO05D005715 4.3e-14 83.2 93 50.5
SHI01140 Sapria himalayana HOM05D004650 ORTHO05D005715 4.3e-14 83.2 82 53.7
A04p16150 Brassica napus HOM05D004650 ORTHO05D005715 5.6e-14 82.8 87 51.7
Carub.0004s0049 Capsella rubella HOM05D004650 ORTHO05D005715 9.6e-14 82.0 123 40.7
AL4G10620 Arabidopsis lyrata HOM05D004650 ORTHO05D005715 1.6e-13 81.3 88 48.9
EL10Ac3g05863 Beta vulgaris HOM05D004650 ORTHO05D005715 1.6e-13 81.3 281 29.9
CARHR112350 Cardamine hirsuta HOM05D004650 ORTHO05D005715 1.6e-13 81.3 87 49.4
Thhalv10023293m.g Eutrema salsugineum HOM05D004650 ORTHO05D005715 1.6e-13 81.3 87 51.7
Prupe.8G089700 Prunus persica HOM05D004650 ORTHO05D005715 1.6e-13 81.3 67 64.2
Os03g0801800 Oryza sativa ssp. japonica HOM05D004650 ORTHO05D005715 2.1e-13 80.9 153 38.6
TWI75G0911 Tripterygium wilfordii HOM05D004650 ORTHO05D005715 2.1e-13 80.9 80 57.5
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 3.7e-13 80.1 100 49.0
BcaC02g08791 Brassica carinata HOM05D004650 ORTHO05D005715 6.2e-13 79.3 73 57.5
C04p50630 Brassica napus HOM05D004650 ORTHO05D005715 6.2e-13 79.3 73 57.5
Os03g0824300 Oryza sativa ssp. japonica HOM05D004650 ORTHO05D005715 1.1e-12 78.6 153 37.3
AT2G21440 Arabidopsis thaliana HOM05D004650 ORTHO05D005715 1.4e-12 78.2 83 50.6
Peaxi162Scf00016g00358 Petunia axillaris HOM05D004650 ORTHO05D005715 3.1e-12 77.0 287 35.2
CAN.G542.9 Capsicum annuum HOM05D002907 ORTHO05D005554 5.3e-12 76.3 56 73.2
CDE02G0935 Ceratophyllum demersum HOM05D004650 ORTHO05D005715 6.9e-12 75.9 123 40.7
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.5e-11 74.7 92 50.0
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 4.5e-11 73.2 50 68.0
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 7.6e-11 72.4 50 66.0
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.0e-10 72.0 50 66.0
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.7e-10 71.2 100 47.0
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.8e-10 70.1 65 55.4
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 8.4e-10 68.9 65 53.8
Zm00001eb212720 Zea mays HOM05D004650 ORTHO05D005715 1.4e-09 68.2 73 53.4
SEGI_17742 Sequoiadendron giganteum HOM05D004650 ORTHO05D005715 2.5e-09 67.4 111 37.8
SEGI_24468 Sequoiadendron giganteum HOM05D004650 ORTHO05D005715 2.5e-09 67.4 111 37.8
Mapoly0009s0044 Marchantia polymorpha HOM05D004650 ORTHO05D005715 9.3e-09 65.5 143 35.0
AagrBONN_evm.TU.Sc2ySwM_369.318 Anthoceros agrestis HOM05D004650 ORTHO05D005715 6.0e-08 62.8 149 31.5
FvH4_7g06403 Fragaria vesca HOM05D004650 ORTHO05D005715 5.1e-07 59.7 89 42.7
SalBow7G2745 Salvia bowleyana HOM05D003635 ORTHO05D004283 4.3e-06 56.6 30 86.7
CAN.G1557.8 Capsicum annuum HOM05D003635 ORTHO05D004283 7.4e-06 55.8 30 83.3
Nitab4.5_0000426g0110 Nicotiana tabacum HOM05D003635 ORTHO05D004283 7.4e-06 55.8 30 83.3
Nitab4.5_0012497g0010 Nicotiana tabacum HOM05D003635 ORTHO05D004283 7.4e-06 55.8 30 83.3
Peaxi162Scf00060g00511 Petunia axillaris HOM05D003635 ORTHO05D004283 7.4e-06 55.8 30 83.3
Solyc04g010260.3 Solanum lycopersicum HOM05D003635 ORTHO05D004283 7.4e-06 55.8 30 83.3
Sopen04g005450 Solanum pennellii HOM05D003635 ORTHO05D004283 7.4e-06 55.8 30 83.3
PGSC0003DMG400030187 Solanum tuberosum HOM05D003635 ORTHO05D004283 7.4e-06 55.8 30 83.3
SGA_v2.0_scaffold364G49990 Striga asiatica HOM05D003635 ORTHO05D004283 7.4e-06 55.8 30 86.7
Eucgr.J01165 Eucalyptus grandis HOM05D003635 ORTHO05D004283 9.6e-06 55.5 30 83.3


User provided reference genes

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