Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G825.8 Capsicum annuum HOM05D002498 ORTHO05D002553 7.7e-74 280.4 143 100.0
PGSC0003DMG402004858 Solanum tuberosum HOM05D002498 ORTHO05D002553 1.3e-44 183.3 191 59.2
Solyc06g062900.4 Solanum lycopersicum HOM05D002498 ORTHO05D002553 1.4e-43 179.9 192 57.8
CAN.G825.9 Capsicum annuum HOM05D002498 ORTHO05D002553 7.0e-43 177.6 180 59.4
Sopen06g022350 Solanum pennellii HOM05D002498 ORTHO05D002553 1.1e-40 170.2 192 55.7
Peaxi162Scf00038g01936 Petunia axillaris HOM05D002498 ORTHO05D002553 1.2e-34 150.2 163 54.6
PGSC0003DMG400002568 Solanum tuberosum HOM05D002498 ORTHO05D002553 1.4e-30 136.7 188 47.3
Solyc03g122020.4 Solanum lycopersicum HOM05D002498 ORTHO05D002553 5.2e-30 134.8 188 47.3
Sopen03g040820 Solanum pennellii HOM05D002498 ORTHO05D002553 5.2e-30 134.8 188 47.3
Nitab4.5_0012529g0010 Nicotiana tabacum HOM05D002498 ORTHO05D002553 7.5e-29 131.0 213 43.2
CAN.G862.29 Capsicum annuum HOM05D002498 ORTHO05D002553 9.8e-29 130.6 188 45.7
Dinv30674 Davidia involucrata HOM05D002498 ORTHO05D002553 4.6e-26 121.7 188 43.1
Dinv34334 Davidia involucrata HOM05D002498 ORTHO05D002553 4.6e-26 121.7 188 43.1
Gohir.A06G193600 Gossypium hirsutum HOM05D002498 ORTHO05D002553 2.3e-25 119.4 182 44.0
Rhsim12G0209700 Rhododendron simsii HOM05D002498 ORTHO05D002553 2.3e-25 119.4 189 42.9
Thecc.06G119300 Theobroma cacao HOM05D002498 ORTHO05D002553 2.3e-25 119.4 182 43.4
Manes.11G020700 Manihot esculenta HOM05D002498 ORTHO05D002553 3.0e-25 119.0 187 41.2
Duzib235G0745 Durio zibethinus HOM05D002498 ORTHO05D002553 5.0e-25 118.2 181 42.0
CANSAT56G2749 Cannabis sativa HOM05D002498 ORTHO05D002553 6.6e-25 117.9 188 42.0
Actinidia26030 Actinidia chinensis HOM05D002498 ORTHO05D002553 8.6e-25 117.5 189 42.9
Actinidia39082 Actinidia chinensis HOM05D002498 ORTHO05D002553 2.5e-24 115.9 189 42.9
MD09G1184100 Malus domestica HOM05D002498 ORTHO05D002553 3.3e-24 115.5 188 41.0
Duzib192G0999 Durio zibethinus HOM05D002498 ORTHO05D002553 4.3e-24 115.2 182 42.3
Nitab4.5_0009241g0020 Nicotiana tabacum HOM05D002498 ORTHO05D002553 4.3e-24 115.2 161 47.8
RcHm_v2.0_Chr2g0145171 Rosa chinensis HOM05D002498 ORTHO05D002553 7.3e-24 114.4 186 42.5
Gohir.D06G201400 Gossypium hirsutum HOM05D002498 ORTHO05D002553 9.5e-24 114.0 188 41.5
Gorai.010G235100 Gossypium raimondii HOM05D002498 ORTHO05D002553 9.5e-24 114.0 188 41.5
Prupe.3G042400 Prunus persica HOM05D002498 ORTHO05D002553 9.5e-24 114.0 187 40.6
COL.COLO4_30763 Corchorus olitorius HOM05D002498 ORTHO05D002553 1.6e-23 113.2 183 42.1
Potri.001G169900 Populus trichocarpa HOM05D002498 ORTHO05D002553 2.1e-23 112.8 185 42.2
MD17G1168400 Malus domestica HOM05D002498 ORTHO05D002553 2.8e-23 112.5 188 42.0
GSVIVG01016770001 Vitis vinifera HOM05D002498 ORTHO05D002553 2.8e-23 112.5 191 41.9
Gorai.011G058700 Gossypium raimondii HOM05D002498 ORTHO05D002553 4.7e-23 111.7 185 41.1
Hma1.2p1_0291F.1_g115140 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 4.7e-23 111.7 190 40.5
Gohir.D10G055000 Gossypium hirsutum HOM05D002498 ORTHO05D002553 6.2e-23 111.3 185 41.1
Aqoxy1G00838 Aquilegia oxysepala HOM05D002498 ORTHO05D002553 8.0e-23 110.9 179 43.6
Ciclev10025234m.g Citrus clementina HOM05D002498 ORTHO05D002553 1.1e-22 110.5 189 41.3
FvH4_6g34640 Fragaria vesca HOM05D002498 ORTHO05D002553 1.1e-22 110.5 182 41.2
THA.LOC104808053 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 1.4e-22 110.2 187 40.6
Potri.003G064100 Populus trichocarpa HOM05D002498 ORTHO05D002553 1.8e-22 109.8 185 41.6
AUR62000647 Chenopodium quinoa HOM05D002498 ORTHO05D002553 3.1e-22 109.0 188 41.0
TAR633G2028 Trochodendron aralioides HOM05D002498 ORTHO05D002553 3.1e-22 109.0 186 43.0
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 8.9e-22 107.5 184 42.9
Gohir.A10G053200 Gossypium hirsutum HOM05D002498 ORTHO05D002553 1.5e-21 106.7 185 41.1
Nitab4.5_0009182g0030 Nicotiana tabacum HOM05D002498 ORTHO05D002553 2.0e-21 106.3 119 52.9
DCAR_016127 Daucus carota HOM05D002498 ORTHO05D002553 2.6e-21 105.9 191 37.2
Hma1.2p1_0496F.1_g166220 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 3.4e-21 105.5 189 40.7
Lalb_Chr01g0013581 Lupinus albus HOM05D002498 ORTHO05D002553 4.4e-21 105.1 185 39.5
Manes.04G144200 Manihot esculenta HOM05D002498 ORTHO05D002553 5.8e-21 104.8 188 40.4
EL10Ac4g09793 Beta vulgaris HOM05D002498 ORTHO05D002553 7.5e-21 104.4 188 39.9
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 9.8e-21 104.0 198 37.9
FAN05G3736 Fragaria x ananassa HOM05D002498 ORTHO05D002553 9.8e-21 104.0 198 37.9
THA.LOC104813958 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 1.3e-20 103.6 185 39.5
Lj3g0023911 Lotus japonicus HOM05D002498 ORTHO05D002553 1.7e-20 103.2 183 40.4
Lalb_Chr04g0263441 Lupinus albus HOM05D002498 ORTHO05D002553 2.9e-20 102.4 183 40.4
PSO384G1420 Papaver somniferum HOM05D002498 ORTHO05D002553 3.7e-20 102.1 178 40.4
Sp1g15580 Schrenkiella parvula HOM05D002498 ORTHO05D002553 3.7e-20 102.1 188 39.9
AL1G29720 Arabidopsis lyrata HOM05D002498 ORTHO05D002553 4.9e-20 101.7 190 40.0
Thhalv10006997m.g Eutrema salsugineum HOM05D002498 ORTHO05D002553 4.9e-20 101.7 188 38.8
FAN09G3304 Fragaria x ananassa HOM05D002498 ORTHO05D002553 8.3e-20 100.9 198 37.4
FAN14G0943 Fragaria x ananassa HOM05D002498 ORTHO05D002553 8.3e-20 100.9 198 37.4
PSO339G1709 Papaver somniferum HOM05D002498 ORTHO05D002553 8.3e-20 100.9 178 39.9
arahy.Tifrunner.gnm1.ann1.U78AI9 Arachis hypogaea HOM05D002498 ORTHO05D002553 1.1e-19 100.5 187 39.6
CARHR018030 Cardamine hirsuta HOM05D002498 ORTHO05D002553 1.1e-19 100.5 184 40.2
Glyma.07G037600 Glycine max HOM05D002498 ORTHO05D002553 1.1e-19 100.5 184 40.2
A06p13370 Brassica napus HOM05D002498 ORTHO05D002553 1.4e-19 100.1 188 40.4
C05p15830 Brassica napus HOM05D002498 ORTHO05D002553 1.4e-19 100.1 188 40.4
BolC5t30289H Brassica oleracea HOM05D002498 ORTHO05D002553 1.4e-19 100.1 188 40.4
BraA06t24489Z Brassica rapa HOM05D002498 ORTHO05D002553 1.4e-19 100.1 188 40.4
CsaV3_7G034500 Cucumis sativus L. HOM05D002498 ORTHO05D002553 1.4e-19 100.1 183 40.4
MBI14_g32128_MAGBIO Magnolia biondii HOM05D002498 ORTHO05D002553 2.4e-19 99.4 185 38.9
QL05p007807 Quercus lobata HOM05D002498 ORTHO05D002553 2.4e-19 99.4 184 39.1
Carub.0001s1720 Capsella rubella HOM05D002498 ORTHO05D002553 5.4e-19 98.2 181 39.8
Lj9A523T54 Lonicera japonica HOM05D002498 ORTHO05D002553 5.4e-19 98.2 105 54.3
Sed0015077 Sechium edule HOM05D002498 ORTHO05D002553 5.4e-19 98.2 179 39.1
AT1G17440 Arabidopsis thaliana HOM05D002498 ORTHO05D002553 7.0e-19 97.8 177 40.1
Migut.I01070 Erythranthe guttata HOM05D002498 ORTHO05D002553 7.0e-19 97.8 188 38.8
Dinv20442 Davidia involucrata HOM05D002498 ORTHO05D002553 9.2e-19 97.4 104 53.8
Phvul.010G130700 Phaseolus vulgaris HOM05D002498 ORTHO05D002553 1.2e-18 97.1 186 38.2
SalBow6G2845 Salvia bowleyana HOM05D002498 ORTHO05D002553 1.2e-18 97.1 109 53.2
Haze_16027 Corylus avellana HOM05D002498 ORTHO05D002553 1.6e-18 96.7 102 53.9
PGR119G0909 Punica granatum HOM05D002498 ORTHO05D002553 1.6e-18 96.7 172 40.1
TPR.G32477 Trifolium pratense HOM05D002498 ORTHO05D002553 3.5e-18 95.5 189 38.1
Atru.chr1.3950 Acer truncatum HOM05D002498 ORTHO05D002553 6.0e-18 94.7 101 54.5
Eucgr.F03174 Eucalyptus grandis HOM05D002498 ORTHO05D002553 6.0e-18 94.7 188 37.8
Nitab4.5_0002072g0070 Nicotiana tabacum HOM05D002498 ORTHO05D002553 6.0e-18 94.7 146 43.2
Cc11_g03670 Coffea canephora HOM05D002498 ORTHO05D002553 7.8e-18 94.4 160 39.4
Ah.06g188950 Amaranthus hybridus HOM05D002498 ORTHO05D002553 1.0e-17 94.0 101 52.5
Sc12g0010550 Simmondsia chinensis HOM05D002498 ORTHO05D002553 1.0e-17 94.0 183 37.7
Ca_23371_v3 Cicer arietinum L. HOM05D002498 ORTHO05D002553 1.3e-17 93.6 173 38.7
VMungo0331G0210 Vigna mungo HOM05D002498 ORTHO05D002553 2.3e-17 92.8 183 37.7
MSTRG.14437 Avicennia marina HOM05D002498 ORTHO05D002553 3.0e-17 92.4 101 53.5
CiPaw.01G219200 Carya illinoinensis HOM05D002498 ORTHO05D002553 3.9e-17 92.0 100 54.0
Medtr8g020480 Medicago truncatula HOM05D002498 ORTHO05D002553 2.5e-16 89.4 188 36.7
TAR636G1942 Trochodendron aralioides HOM05D002498 ORTHO05D002553 4.3e-16 88.6 101 53.5
unitig_32.g11187 Utricularia gibba HOM05D002498 ORTHO05D002553 7.3e-16 87.8 99 52.5
HanXRQChr04g0094561 Helianthus annuus HOM05D002498 ORTHO05D002553 1.2e-15 87.0 188 36.2
Oeu007562.1 Olea europaea HOM05D002498 ORTHO05D002553 1.2e-15 87.0 109 47.7
Lj5A37T39 Lonicera japonica HOM05D002498 ORTHO05D002553 1.6e-15 86.7 162 38.9
BolC8t51935H Brassica oleracea HOM05D002498 ORTHO05D002553 2.1e-15 86.3 185 35.7
MELO3C024357.2 Cucumis melo HOM05D002498 ORTHO05D002553 2.8e-15 85.9 100 51.0
C08p43860 Brassica napus HOM05D002498 ORTHO05D002553 3.6e-15 85.5 185 35.7
Glyma.16G007032 Glycine max HOM05D002498 ORTHO05D002553 1.8e-14 83.2 101 49.5
Aa31LG4G2990 Aethionema arabicum HOM05D002498 ORTHO05D002553 5.2e-14 81.6 155 40.6
ECA247G3107 Erigeron canadensis HOM05D002498 ORTHO05D002553 5.2e-14 81.6 190 34.2
Lsat_1_v5_gn_1_38060 Lactuca sativa HOM05D002498 ORTHO05D002553 8.9e-14 80.9 160 36.9
ATR0559G035 Amborella trichopoda HOM05D002498 ORTHO05D002553 1.5e-13 80.1 94 54.3
Actinidia37365 Actinidia chinensis HOM05D002498 ORTHO05D002553 2.6e-13 79.3 177 36.2
SHI32207 Sapria himalayana HOM05D002498 ORTHO05D002553 1.7e-12 76.6 101 47.5
HPP92_026973 Vanilla planifolia HOM05D002498 ORTHO05D002553 2.2e-12 76.3 102 49.0
CDE09G0028 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 1.4e-11 73.6 96 52.1
Os01g0846900 Oryza sativa ssp. japonica HOM05D002498 ORTHO05D002553 4.1e-11 72.0 96 46.9
CDE02G1135 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 9.2e-11 70.9 171 38.0
A09p60370 Brassica napus HOM05D002498 ORTHO05D002553 1.2e-10 70.5 185 33.0
BraA09t41409Z Brassica rapa HOM05D002498 ORTHO05D002553 1.2e-10 70.5 185 33.0
CAN.G825.10 Capsicum annuum HOM05D002498 ORTHO05D002553 1.6e-10 70.1 54 70.4
vmacro22041 Vaccinium macrocarpon HOM05D002498 ORTHO05D002553 2.1e-10 69.7 116 39.7
Zm00001eb148060 Zea mays HOM05D002498 ORTHO05D002553 4.6e-10 68.6 166 33.7
Zm00001eb367790 Zea mays HOM05D002498 ORTHO05D002553 1.0e-09 67.4 168 33.9
Dinv37872 Davidia involucrata HOM05D002498 ORTHO05D002553 1.3e-09 67.0 54 63.0
Ah.08g210740 Amaranthus hybridus HOM05D002498 ORTHO05D002553 8.6e-09 64.3 64 50.0
Psat4g182480 Pisum sativum HOM05D002498 ORTHO05D002553 8.6e-09 64.3 157 35.0
Sabra03G0037800 Salix brachista HOM05D002498 ORTHO05D002553 8.6e-09 64.3 51 64.7
FAN14G2103 Fragaria x ananassa HOM05D002498 ORTHO05D002553 1.1e-08 63.9 77 45.5
FAN05G0009 Fragaria x ananassa HOM05D002498 ORTHO05D002553 1.5e-08 63.5 77 45.5
FAN05G3504 Fragaria x ananassa HOM05D002498 ORTHO05D002553 1.5e-08 63.5 77 45.5
arahy.Tifrunner.gnm1.ann1.T5SCHP Arachis hypogaea HOM05D002498 ORTHO05D002553 9.5e-08 60.8 114 37.7
PSO339G1275 Papaver somniferum HOM05D002498 ORTHO05D002553 1.6e-07 60.1 106 38.7
SGA_v2.0_scaffold71G23856 Striga asiatica HOM05D002498 ORTHO05D002553 3.6e-07 58.9 90 44.4
PSO384G1407 Papaver somniferum HOM05D002498 ORTHO05D002553 4.7e-07 58.5 106 39.6
Peaxi162Scf00207g01425 Petunia axillaris HOM05D002498 ORTHO05D002553 6.2e-07 58.2 76 50.0
Sabra01G0141600 Salix brachista HOM05D002498 ORTHO05D002553 3.1e-06 55.8 68 50.0
MD14G1020000 Malus domestica HOM05D002498 ORTHO05D002553 5.2e-06 55.1 101 34.7


User provided reference genes

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