Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G825.10 Capsicum annuum HOM05D002498 ORTHO05D002553 6.6e-193 677.2 338 100.0
CAN.G825.9 Capsicum annuum HOM05D002498 ORTHO05D002553 1.3e-34 151.4 190 52.1
PGSC0003DMG402004858 Solanum tuberosum HOM05D002498 ORTHO05D002553 7.0e-25 119.0 247 39.3
Solyc06g062900.4 Solanum lycopersicum HOM05D002498 ORTHO05D002553 1.3e-23 114.8 247 38.5
Sopen06g022350 Solanum pennellii HOM05D002498 ORTHO05D002553 5.0e-23 112.8 247 38.1
Solyc03g122020.4 Solanum lycopersicum HOM05D002498 ORTHO05D002553 7.2e-22 109.0 193 41.5
Sopen03g040820 Solanum pennellii HOM05D002498 ORTHO05D002553 7.2e-22 109.0 193 41.5
Nitab4.5_0012529g0010 Nicotiana tabacum HOM05D002498 ORTHO05D002553 1.2e-21 108.2 236 36.9
PGSC0003DMG400002568 Solanum tuberosum HOM05D002498 ORTHO05D002553 1.2e-21 108.2 193 41.5
CAN.G862.29 Capsicum annuum HOM05D002498 ORTHO05D002553 1.0e-20 105.1 79 72.2
Lj9A523T54 Lonicera japonica HOM05D002498 ORTHO05D002553 4.0e-20 103.2 79 69.6
Dinv20442 Davidia involucrata HOM05D002498 ORTHO05D002553 8.8e-20 102.1 79 69.6
Prupe.3G042400 Prunus persica HOM05D002498 ORTHO05D002553 1.2e-19 101.7 79 68.4
GSVIVG01016770001 Vitis vinifera HOM05D002498 ORTHO05D002553 1.2e-19 101.7 79 70.9
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.5e-19 101.3 193 39.9
Actinidia26030 Actinidia chinensis HOM05D002498 ORTHO05D002553 2.0e-19 100.9 79 69.6
MD09G1184100 Malus domestica HOM05D002498 ORTHO05D002553 2.0e-19 100.9 79 68.4
Manes.11G020700 Manihot esculenta HOM05D002498 ORTHO05D002553 2.0e-19 100.9 76 71.1
Rhsim12G0209700 Rhododendron simsii HOM05D002498 ORTHO05D002553 2.0e-19 100.9 79 69.6
Oeu007562.1 Olea europaea HOM05D002498 ORTHO05D002553 2.6e-19 100.5 91 60.4
FAN09G3304 Fragaria x ananassa HOM05D002498 ORTHO05D002553 3.4e-19 100.1 193 39.9
FAN14G0943 Fragaria x ananassa HOM05D002498 ORTHO05D002553 3.4e-19 100.1 193 39.9
Actinidia39082 Actinidia chinensis HOM05D002498 ORTHO05D002553 4.4e-19 99.8 79 68.4
Ciclev10025234m.g Citrus clementina HOM05D002498 ORTHO05D002553 7.5e-19 99.0 76 72.4
Dinv30674 Davidia involucrata HOM05D002498 ORTHO05D002553 7.5e-19 99.0 79 67.1
Dinv34334 Davidia involucrata HOM05D002498 ORTHO05D002553 7.5e-19 99.0 79 67.1
Duzib235G0745 Durio zibethinus HOM05D002498 ORTHO05D002553 9.8e-19 98.6 76 69.7
EL10Ac4g09793 Beta vulgaris HOM05D002498 ORTHO05D002553 1.3e-18 98.2 194 39.7
Haze_16027 Corylus avellana HOM05D002498 ORTHO05D002553 1.3e-18 98.2 76 69.7
DCAR_016127 Daucus carota HOM05D002498 ORTHO05D002553 1.3e-18 98.2 91 59.3
Lalb_Chr01g0013581 Lupinus albus HOM05D002498 ORTHO05D002553 1.3e-18 98.2 74 68.9
Manes.04G144200 Manihot esculenta HOM05D002498 ORTHO05D002553 1.3e-18 98.2 76 71.1
Sabra01G0141600 Salix brachista HOM05D002498 ORTHO05D002553 1.3e-18 98.2 238 36.1
Cc11_g03670 Coffea canephora HOM05D002498 ORTHO05D002553 1.7e-18 97.8 79 65.8
COL.COLO4_30763 Corchorus olitorius HOM05D002498 ORTHO05D002553 2.2e-18 97.4 76 69.7
Eucgr.F03174 Eucalyptus grandis HOM05D002498 ORTHO05D002553 2.2e-18 97.4 75 68.0
Gohir.D10G055000 Gossypium hirsutum HOM05D002498 ORTHO05D002553 2.2e-18 97.4 79 67.1
Gorai.011G058700 Gossypium raimondii HOM05D002498 ORTHO05D002553 2.2e-18 97.4 79 67.1
MD17G1168400 Malus domestica HOM05D002498 ORTHO05D002553 2.2e-18 97.4 79 68.4
Thecc.06G119300 Theobroma cacao HOM05D002498 ORTHO05D002553 2.2e-18 97.4 76 69.7
Hma1.2p1_0496F.1_g166220 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 2.8e-18 97.1 79 68.4
QL05p007807 Quercus lobata HOM05D002498 ORTHO05D002553 2.8e-18 97.1 75 69.3
Gohir.A06G193600 Gossypium hirsutum HOM05D002498 ORTHO05D002553 3.7e-18 96.7 76 68.4
Gohir.D06G201400 Gossypium hirsutum HOM05D002498 ORTHO05D002553 3.7e-18 96.7 76 68.4
Gorai.010G235100 Gossypium raimondii HOM05D002498 ORTHO05D002553 3.7e-18 96.7 76 68.4
Potri.001G169900 Populus trichocarpa HOM05D002498 ORTHO05D002553 3.7e-18 96.7 76 69.7
AUR62000647 Chenopodium quinoa HOM05D002498 ORTHO05D002553 4.8e-18 96.3 194 39.2
Duzib192G0999 Durio zibethinus HOM05D002498 ORTHO05D002553 4.8e-18 96.3 76 68.4
FvH4_6g34640 Fragaria vesca HOM05D002498 ORTHO05D002553 6.3e-18 95.9 79 65.8
FAN05G3736 Fragaria x ananassa HOM05D002498 ORTHO05D002553 6.3e-18 95.9 79 65.8
Potri.003G064100 Populus trichocarpa HOM05D002498 ORTHO05D002553 6.3e-18 95.9 76 69.7
RcHm_v2.0_Chr2g0145171 Rosa chinensis HOM05D002498 ORTHO05D002553 6.3e-18 95.9 79 65.8
Ah.06g188950 Amaranthus hybridus HOM05D002498 ORTHO05D002553 8.3e-18 95.5 194 37.6
CiPaw.01G219200 Carya illinoinensis HOM05D002498 ORTHO05D002553 1.1e-17 95.1 75 69.3
Migut.I01070 Erythranthe guttata HOM05D002498 ORTHO05D002553 1.1e-17 95.1 79 65.8
PGR119G0909 Punica granatum HOM05D002498 ORTHO05D002553 1.1e-17 95.1 79 65.8
THA.LOC104808053 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 1.1e-17 95.1 76 68.4
THA.LOC104813958 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 1.4e-17 94.7 76 67.1
Atru.chr1.3950 Acer truncatum HOM05D002498 ORTHO05D002553 1.8e-17 94.4 76 68.4
Gohir.A10G053200 Gossypium hirsutum HOM05D002498 ORTHO05D002553 1.8e-17 94.4 79 65.8
Hma1.2p1_0291F.1_g115140 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 1.8e-17 94.4 76 67.1
Lj3g0023911 Lotus japonicus HOM05D002498 ORTHO05D002553 1.8e-17 94.4 74 66.2
MSTRG.14437 Avicennia marina HOM05D002498 ORTHO05D002553 2.4e-17 94.0 76 67.1
SalBow6G2845 Salvia bowleyana HOM05D002498 ORTHO05D002553 2.4e-17 94.0 79 64.6
Sc12g0010550 Simmondsia chinensis HOM05D002498 ORTHO05D002553 2.4e-17 94.0 75 68.0
CANSAT56G2749 Cannabis sativa HOM05D002498 ORTHO05D002553 3.1e-17 93.6 76 67.1
Glyma.07G037600 Glycine max HOM05D002498 ORTHO05D002553 3.1e-17 93.6 74 66.2
Lalb_Chr04g0263441 Lupinus albus HOM05D002498 ORTHO05D002553 3.1e-17 93.6 74 67.6
MELO3C024357.2 Cucumis melo HOM05D002498 ORTHO05D002553 5.4e-17 92.8 75 69.3
CsaV3_7G034500 Cucumis sativus L. HOM05D002498 ORTHO05D002553 5.4e-17 92.8 75 69.3
Phvul.010G130700 Phaseolus vulgaris HOM05D002498 ORTHO05D002553 7.0e-17 92.4 74 66.2
Glyma.16G007032 Glycine max HOM05D002498 ORTHO05D002553 9.1e-17 92.0 74 64.9
CARHR018030 Cardamine hirsuta HOM05D002498 ORTHO05D002553 1.2e-16 91.7 75 66.7
Ca_23371_v3 Cicer arietinum L. HOM05D002498 ORTHO05D002553 1.2e-16 91.7 75 68.0
HanXRQChr04g0094561 Helianthus annuus HOM05D002498 ORTHO05D002553 1.2e-16 91.7 75 66.7
Medtr8g020480 Medicago truncatula HOM05D002498 ORTHO05D002553 1.6e-16 91.3 80 65.0
ATR0559G035 Amborella trichopoda HOM05D002498 ORTHO05D002553 2.7e-16 90.5 68 67.6
arahy.Tifrunner.gnm1.ann1.U78AI9 Arachis hypogaea HOM05D002498 ORTHO05D002553 2.7e-16 90.5 77 63.6
C05p15830 Brassica napus HOM05D002498 ORTHO05D002553 2.7e-16 90.5 79 63.3
BolC5t30289H Brassica oleracea HOM05D002498 ORTHO05D002553 2.7e-16 90.5 79 63.3
Thhalv10006997m.g Eutrema salsugineum HOM05D002498 ORTHO05D002553 2.7e-16 90.5 79 63.3
Sed0015077 Sechium edule HOM05D002498 ORTHO05D002553 3.5e-16 90.1 75 66.7
Carub.0001s1720 Capsella rubella HOM05D002498 ORTHO05D002553 4.5e-16 89.7 79 63.3
VMungo0331G0210 Vigna mungo HOM05D002498 ORTHO05D002553 4.5e-16 89.7 73 65.8
AL1G29720 Arabidopsis lyrata HOM05D002498 ORTHO05D002553 5.9e-16 89.4 79 62.0
TPR.G32477 Trifolium pratense HOM05D002498 ORTHO05D002553 5.9e-16 89.4 80 65.0
Aa31LG4G2990 Aethionema arabicum HOM05D002498 ORTHO05D002553 7.7e-16 89.0 74 64.9
AT1G17440 Arabidopsis thaliana HOM05D002498 ORTHO05D002553 7.7e-16 89.0 75 65.3
Sp1g15580 Schrenkiella parvula HOM05D002498 ORTHO05D002553 1.0e-15 88.6 79 62.0
TAR636G1942 Trochodendron aralioides HOM05D002498 ORTHO05D002553 1.3e-15 88.2 76 65.8
Lsat_1_v5_gn_1_38060 Lactuca sativa HOM05D002498 ORTHO05D002553 1.7e-15 87.8 87 56.3
TAR633G2028 Trochodendron aralioides HOM05D002498 ORTHO05D002553 2.9e-15 87.0 76 64.5
A06p13370 Brassica napus HOM05D002498 ORTHO05D002553 3.8e-15 86.7 79 60.8
BraA06t24489Z Brassica rapa HOM05D002498 ORTHO05D002553 3.8e-15 86.7 79 60.8
Os01g0846900 Oryza sativa ssp. japonica HOM05D002498 ORTHO05D002553 5.0e-15 86.3 71 67.6
PSO384G1420 Papaver somniferum HOM05D002498 ORTHO05D002553 5.0e-15 86.3 71 67.6
Aqoxy1G00838 Aquilegia oxysepala HOM05D002498 ORTHO05D002553 8.6e-15 85.5 71 64.8
Lj5A37T39 Lonicera japonica HOM05D002498 ORTHO05D002553 8.6e-15 85.5 73 61.6
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 1.1e-14 85.1 75 68.0
Sabra03G0037800 Salix brachista HOM05D002498 ORTHO05D002553 1.1e-14 85.1 90 57.8
PSO339G1709 Papaver somniferum HOM05D002498 ORTHO05D002553 1.5e-14 84.7 71 66.2
ECA247G3107 Erigeron canadensis HOM05D002498 ORTHO05D002553 4.2e-14 83.2 75 61.3
HPP92_026973 Vanilla planifolia HOM05D002498 ORTHO05D002553 5.5e-14 82.8 77 64.9
SHI32207 Sapria himalayana HOM05D002498 ORTHO05D002553 7.2e-14 82.4 76 63.2
Zm00001eb148060 Zea mays HOM05D002498 ORTHO05D002553 9.5e-14 82.0 71 64.8
ClCG09G000950 Citrullus lanatus HOM05D002498 ORTHO05D002553 1.6e-13 81.3 85 60.0
unitig_32.g11187 Utricularia gibba HOM05D002498 ORTHO05D002553 2.8e-13 80.5 74 60.8
MBI14_g32128_MAGBIO Magnolia biondii HOM05D002498 ORTHO05D002553 3.6e-13 80.1 63 68.3
Zm00001eb367790 Zea mays HOM05D002498 ORTHO05D002553 8.0e-13 79.0 78 61.5
Nitab4.5_0009241g0020 Nicotiana tabacum HOM05D002498 ORTHO05D002553 6.8e-12 75.9 163 37.4
C08p43860 Brassica napus HOM05D002498 ORTHO05D002553 8.9e-12 75.5 76 57.9
BolC8t51935H Brassica oleracea HOM05D002498 ORTHO05D002553 8.9e-12 75.5 76 57.9
CDE09G0028 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 9.8e-11 72.0 70 57.1
Peaxi162Scf00038g01936 Petunia axillaris HOM05D002498 ORTHO05D002553 8.3e-10 68.9 54 70.4
CAN.G825.8 Capsicum annuum HOM05D002498 ORTHO05D002553 1.1e-09 68.6 54 70.4
Nitab4.5_0009182g0030 Nicotiana tabacum HOM05D002498 ORTHO05D002553 2.4e-09 67.4 49 65.3
CDE02G1135 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 4.1e-09 66.6 70 54.3
Dinv37872 Davidia involucrata HOM05D002498 ORTHO05D002553 4.1e-09 66.6 56 66.1
A09p60370 Brassica napus HOM05D002498 ORTHO05D002553 2.0e-08 64.3 76 50.0
BraA09t41409Z Brassica rapa HOM05D002498 ORTHO05D002553 2.0e-08 64.3 76 50.0
Nitab4.5_0002072g0070 Nicotiana tabacum HOM05D002498 ORTHO05D002553 3.5e-08 63.5 40 75.0
vmacro22041 Vaccinium macrocarpon HOM05D002498 ORTHO05D002553 5.9e-08 62.8 82 47.6
PSO384G1407 Papaver somniferum HOM05D002498 ORTHO05D002553 7.8e-08 62.4 81 43.2
ECA233G3368 Erigeron canadensis HOM05D002498 ORTHO05D002553 1.7e-07 61.2 46 58.7
Psat4g182480 Pisum sativum HOM05D002498 ORTHO05D002553 1.7e-07 61.2 47 66.0
MD12G1023000 Malus domestica HOM05D002498 ORTHO05D002553 3.8e-07 60.1 75 41.3
PSO339G1275 Papaver somniferum HOM05D002498 ORTHO05D002553 3.8e-07 60.1 81 40.7
HanXRQChr13g0401921 Helianthus annuus HOM05D002498 ORTHO05D002553 1.1e-06 58.5 44 56.8
Manes.09G056700 Manihot esculenta HOM05D002498 ORTHO05D002553 1.1e-06 58.5 43 55.8
Sp3g08380 Schrenkiella parvula HOM05D002498 ORTHO05D002553 1.1e-06 58.5 51 47.1
Actinidia05442 Actinidia chinensis HOM05D002498 ORTHO05D002553 1.5e-06 58.2 44 56.8
Aa31LG3G2610 Aethionema arabicum HOM05D002498 ORTHO05D002553 1.5e-06 58.2 64 42.2
BcaC09g48117 Brassica carinata HOM05D002498 ORTHO05D002553 1.5e-06 58.2 96 38.5
Duzib128G0693 Durio zibethinus HOM05D002498 ORTHO05D002553 1.5e-06 58.2 44 54.5
QL07p039457 Quercus lobata HOM05D002498 ORTHO05D002553 1.5e-06 58.2 44 56.8
THA.LOC104816386 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 1.5e-06 58.2 44 50.0
GSVIVG01033805001 Vitis vinifera HOM05D002498 ORTHO05D002553 1.5e-06 58.2 63 41.3
Zm00001eb147320 Zea mays HOM05D002498 ORTHO05D002553 1.5e-06 58.2 45 55.6
Cfa016584 Carpinus fangiana HOM05D002498 ORTHO05D002553 1.9e-06 57.8 43 58.1
SGA_v2.0_scaffold71G23856 Striga asiatica HOM05D002498 ORTHO05D002553 1.9e-06 57.8 42 61.9
Thecc.05G086100 Theobroma cacao HOM05D002498 ORTHO05D002553 1.9e-06 57.8 44 52.3
Ah.15g091000 Amaranthus hybridus HOM05D000531 ORTHO05D000877 2.5e-06 57.4 44 56.8
Thhalv10020482m.g Eutrema salsugineum HOM05D002498 ORTHO05D002553 2.5e-06 57.4 64 42.2
CSS0029798 Camellia sinensis var. sinensis HOM05D002498 ORTHO05D002553 3.3e-06 57.0 44 52.3
AUR62033516 Chenopodium quinoa HOM05D002498 ORTHO05D002553 3.3e-06 57.0 44 54.5
COL.COLO4_29776 Corchorus olitorius HOM05D002333 ORTHO05D002485 3.3e-06 57.0 44 52.3
Nn2g14104 Nelumbo nucifera HOM05D002498 ORTHO05D002553 3.3e-06 57.0 62 45.2
CANSAT80G2428 Cannabis sativa HOM05D002498 ORTHO05D002553 4.3e-06 56.6 93 35.5
CANSAT80G2666 Cannabis sativa HOM05D002498 ORTHO05D002553 4.3e-06 56.6 93 35.5
Duzib093G0103 Durio zibethinus HOM05D002498 ORTHO05D002553 4.3e-06 56.6 44 52.3
FAN09G2440 Fragaria x ananassa HOM05D002498 ORTHO05D002553 4.3e-06 56.6 57 45.6
MD14G1020000 Malus domestica HOM05D002498 ORTHO05D002553 4.3e-06 56.6 75 40.0
Atru.chr8.1574 Acer truncatum HOM05D002498 ORTHO05D002553 5.6e-06 56.2 63 41.3
A05p38980 Brassica napus HOM05D002498 ORTHO05D002553 5.6e-06 56.2 64 40.6
BraA05t22689Z Brassica rapa HOM05D002498 ORTHO05D002553 5.6e-06 56.2 64 40.6
Haze_19584 Corylus avellana HOM05D002498 ORTHO05D002553 5.6e-06 56.2 57 47.4
DCAR_009154 Daucus carota HOM05D002333 ORTHO05D002485 5.6e-06 56.2 44 52.3
Dinv21224 Davidia involucrata HOM05D001906 ORTHO05D002083 5.6e-06 56.2 46 52.2
Gohir.A01G138400 Gossypium hirsutum HOM05D002498 ORTHO05D002553 5.6e-06 56.2 44 50.0
Gohir.D01G128066 Gossypium hirsutum HOM05D002498 ORTHO05D002553 5.6e-06 56.2 44 50.0
Gohir.D01G128132 Gossypium hirsutum HOM05D002498 ORTHO05D002553 5.6e-06 56.2 44 50.0
Gorai.002G158700 Gossypium raimondii HOM05D002498 ORTHO05D002553 5.6e-06 56.2 44 50.0
SMO140G0017 Selaginella moellendorffii HOM05D002498 ORTHO05D002553 5.6e-06 56.2 48 58.3
CBR_g27956 Chara braunii HOM05D002498 ORTHO05D002553 7.3e-06 55.8 44 54.5
Pp3c19_6040 Physcomitrium patens HOM05D002498 ORTHO05D002553 7.3e-06 55.8 44 54.5
FvH4_6g18380 Fragaria vesca HOM05D002498 ORTHO05D002553 9.5e-06 55.5 76 34.2
Sed0013523 Sechium edule HOM05D002498 ORTHO05D002553 9.5e-06 55.5 45 48.9


User provided reference genes

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